Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C7M16_RS00925 Genome accession   NZ_CP028201
Coordinates   178756..179205 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain SRCM102753     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 173756..184205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS00885 - 174195..174391 (+) 197 Protein_171 hypothetical protein -
  C7M16_RS00890 (C7M16_00172) - 174428..174748 (+) 321 Protein_172 RDD family protein -
  C7M16_RS00895 (C7M16_00173) yckD 174830..175162 (+) 333 WP_015252849.1 YckD family protein -
  C7M16_RS00900 (C7M16_00174) - 175290..175712 (+) 423 WP_174616579.1 MarR family transcriptional regulator -
  C7M16_RS00905 (C7M16_00175) - 175700..176041 (+) 342 WP_032724911.1 DUF3147 family protein -
  C7M16_RS00910 (C7M16_00176) - 176060..176788 (+) 729 WP_160221337.1 AAA family ATPase -
  C7M16_RS00915 (C7M16_00177) bglC 176861..178294 (+) 1434 WP_097080589.1 6-phospho-beta-glucosidase -
  C7M16_RS00920 (C7M16_00178) nin/comJ 178331..178729 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  C7M16_RS00925 (C7M16_00179) nucA/comI 178756..179205 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  C7M16_RS00930 (C7M16_00180) tlpC 179373..181094 (-) 1722 WP_160221338.1 methyl-accepting chemotaxis protein TlpC -
  C7M16_RS00935 (C7M16_00181) hxlB 181205..181762 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  C7M16_RS00940 (C7M16_00182) hxlA 181768..182400 (-) 633 WP_076458402.1 3-hexulose-6-phosphate synthase -
  C7M16_RS00945 (C7M16_00183) hxlR 182632..182994 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=282300 C7M16_RS00925 WP_003234608.1 178756..179205(-) (nucA/comI) [Bacillus subtilis strain SRCM102753]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=282300 C7M16_RS00925 WP_003234608.1 178756..179205(-) (nucA/comI) [Bacillus subtilis strain SRCM102753]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment