Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   D0784_RS04250 Genome accession   NZ_CP033134
Coordinates   884049..887429 (+) Length   1126 a.a.
NCBI ID   WP_162999006.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 879049..892429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS04225 (D0784_04225) sucC 879141..880307 (+) 1167 WP_005426700.1 ADP-forming succinate--CoA ligase subunit beta -
  D0784_RS04230 (D0784_04230) sucD 880307..881179 (+) 873 WP_005436989.1 succinate--CoA ligase subunit alpha -
  D0784_RS04235 (D0784_04235) znuB 881310..882095 (-) 786 WP_045377675.1 zinc ABC transporter permease subunit ZnuB -
  D0784_RS04240 (D0784_04240) znuC 882088..882876 (-) 789 WP_038892101.1 zinc ABC transporter ATP-binding protein ZnuC -
  D0784_RS04245 (D0784_04245) znuA 882955..883836 (+) 882 WP_038892099.1 zinc ABC transporter substrate-binding protein ZnuA -
  D0784_RS04250 (D0784_04250) tfoS 884049..887429 (+) 3381 WP_162999006.1 AraC family transcriptional regulator Regulator
  D0784_RS04255 (D0784_04255) - 888197..888424 (+) 228 WP_005426705.1 FeoA family protein -
  D0784_RS04260 (D0784_04260) feoB 888424..890700 (+) 2277 WP_122018986.1 Fe(2+) transporter permease subunit FeoB -
  D0784_RS04265 (D0784_04265) - 890697..890927 (+) 231 WP_005426709.1 FeoC-like transcriptional regulator -
  D0784_RS04270 (D0784_04270) - 891037..891558 (-) 522 WP_005426711.1 YqhA family protein -
  D0784_RS04275 (D0784_04275) - 891709..892137 (-) 429 WP_005382194.1 HIT family protein -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 126931.25 Da        Isoelectric Point: 6.0319

>NTDB_id=282255 D0784_RS04250 WP_162999006.1 884049..887429(+) (tfoS) [Vibrio campbellii strain 170502]
MLRQIALFFGAFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYHKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGAQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFNIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQMLSGRIRQTLTGPDGALWFADDHKLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSTGLEIYSLKNL
QQMTFPYLQVIAGKAIDHITADGPNRLWISSGYQLFNIDAVNQTMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTVPGSNEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
YYHLSGQLMKHYSSSSGLINNEFLPGICNVIRRAEDSDRQLIFGSQYGLVKADSSKLLVSNTPESKLIVSQVMLENEVVQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASGLSGLDSR
FTVLKPWYLSRLAISGFTLAVIAVLALLMYWRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIANKLPIDVDSATQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGNDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEISWPCAQEPSHVEEALPEFAQTQQPQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSL

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=282255 D0784_RS04250 WP_162999006.1 884049..887429(+) (tfoS) [Vibrio campbellii strain 170502]
TTGCTGCGCCAAATAGCCCTATTTTTTGGGGCTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGCACTTTCATTGCAGCGAAAAAATTGTTCCCCGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTATGATGGTCAAACCACACTGCCAAAATCCGGTAGCTTCCTCAGAAAC
AAAGTAGAGCAGTTGGCTTACCACAAAGGTTCATTTTGGACATTTATTGAAAACGAGGTGTATCAAACTTATCCGAACCA
AGAGCGCCGTTTAGTCTTTAGCCTCAACCCTGGCTCTCAGATCCGTAAGATTGGCTCATCCGGGAACTATATTTGGGTCA
GTGATGGTGCGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAACTCCTTTTCTCTATTGCAGCTCTATCAGCAT
AGCAACAACAGTTACGTCTATATTAACGACGCTATCTTTGTCGAAACCAAGTGGGCATTGGCGACAACTTCAGGCGTATA
CCTATCAGAAGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATTGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTTGGTACTTTAAAAGGCGCGTTGATATTTAATATCTATGAGCCCGGCAAGCCTGTTATTAGAATC
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTGGAACTAGAGCTCGCTAGCACCAAAATTTACTCGT
TGCTGAACGACAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGCAGTTATGACCAGCAAATGCTCTCTGGTCGTATTCGGCAGACGCTTACCGGACCCGATGGTGC
ACTTTGGTTTGCGGACGATCATAAGTTGTATCGCTCGAATAATGGCAGCATTACCGATGTGTTGAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGAGAGAGGCTCTGGGTTGCCACGTCCACGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGATGACATTCCCTTACCTCCAAGTTATCGCAGGCAAGGCAATCGACCATATTACCGCTGATGGCCCCAATCGCCT
TTGGATATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAACCAGACTATGAGAAATTTTGGCAGCGAATGGTTAG
TGAGTAAGTTCTTACCCGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACTGACCACGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCATTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCAAA
TGATGGCTCGCAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCGTTCCGGGCAGCAATGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCGGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
TACTACCATTTATCTGGACAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAACGTTATCCGTCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGCTGACT
CGTCTAAATTGCTGGTTTCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGGTGCAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGCTGCCTTATGGATCGTCCCTTAGTTTCCTTTTTGGTGTGATGCCCAAGCC
TGACAATCAGAATTTGTATTATCGCCTAAATGAAAGTGAGAAATGGCAAACGTTAGAAGGTGGGCAATTAACGTTAGAAC
ACCTTAATTCTGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGGGTTTGAGCGGATTAGACTCCAGA
TTTACAGTGCTTAAACCATGGTATCTATCGAGGTTGGCCATATCGGGCTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAATGTACTGGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGTTAAAAACCAACCAGC
TGCGCCATCAAAGTCGAGTGTTGTTGACTAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTGGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGCGAACAAGCTTCCTATTGATGTGGATTCGGCAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGACACCAGCAGCGGCAGTCAAAATTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGTATTTCATTAGAGAGCTTTAACCTCGATGTCATCTTTAACAGCATCTTTGCCAACATCAT
CAAGCGCTCGTTCCGGGGACAGTTGGTTAAATTAACACTGGAAGAGGGCAATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGCCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGCCATTTATCGATGTTCACTTCTGATGCTCAAAATAAAATAGAGATTTCGTGGCC
ATGTGCTCAAGAGCCAAGCCATGTTGAGGAGGCGCTTCCTGAGTTTGCTCAGACACAGCAACCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGTTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCAGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCGTCGTCCAGAACACTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGCTAGCTGGTGAGAAGATCAGTGAAGTTGCCTTCAACTGTG
GCTTCAATGACCCATCCTACTTTAGCCAGAAGTTTAAATTACACTTTGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCTATAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.574

100

0.396