Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   C9J81_RS09780 Genome accession   NZ_CP028187
Coordinates   1841531..1841977 (-) Length   148 a.a.
NCBI ID   WP_002785938.1    Uniprot ID   A0A693QN79
Organism   Campylobacter coli strain CFSAN054106     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1836531..1846977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J81_RS09765 (C9J81_09770) - 1838337..1838945 (+) 609 WP_002781606.1 gamma-glutamyl-CDP-amidate hydrolase -
  C9J81_RS09770 (C9J81_09775) - 1838942..1839712 (+) 771 WP_002781608.1 sugar phosphate nucleotidyltransferase -
  C9J81_RS09775 (C9J81_09780) - 1839696..1841534 (-) 1839 WP_002785939.1 primosomal protein N' -
  C9J81_RS09780 (C9J81_09785) Cj0683 1841531..1841977 (-) 447 WP_002785938.1 type II secretion system protein Machinery gene
  C9J81_RS09785 (C9J81_09790) - 1841974..1842219 (-) 246 WP_002776428.1 hypothetical protein -
  C9J81_RS09790 (C9J81_09795) - 1842209..1842439 (-) 231 WP_002776426.1 hypothetical protein -
  C9J81_RS09795 (C9J81_09800) uvrB 1842593..1844566 (+) 1974 WP_002818800.1 excinuclease ABC subunit UvrB -
  C9J81_RS09800 (C9J81_09805) - 1844601..1846025 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17312.23 Da        Isoelectric Point: 8.7735

>NTDB_id=282145 C9J81_RS09780 WP_002785938.1 1841531..1841977(-) (Cj0683) [Campylobacter coli strain CFSAN054106]
MKKAFTLLELVFVILILGILASLSFSFVNQNKNDAKLLKLKIDYEMLNSALSLMRTQTELKQINAFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNAKEWVDFFYNANFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=282145 C9J81_RS09780 WP_002785938.1 1841531..1841977(-) (Cj0683) [Campylobacter coli strain CFSAN054106]
ATGAAAAAGGCTTTTACTCTTTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTAGCAAGTTTAAGCTTCTCTTT
TGTCAATCAAAATAAAAATGATGCAAAATTGTTAAAATTAAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGCACTCAGACTGAACTTAAGCAAATCAATGCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAATACTCAAAAAGAA
AAGCTATTTTACTGTCAAACTAGCCAAAATTGCACTTATTCTTTACTTCACACACCCATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAACCGATATAGATTTTTTTTAAATGCAAAAGAATGGGTTGATTTTTTTTATAATGCCAATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTGTTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A693QN79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.459

100

0.595

Multiple sequence alignment