Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   C9J81_RS06130 Genome accession   NZ_CP028187
Coordinates   1137887..1138402 (+) Length   171 a.a.
NCBI ID   WP_107128074.1    Uniprot ID   -
Organism   Campylobacter coli strain CFSAN054106     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1132887..1143402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J81_RS06105 (C9J81_06110) - 1133346..1133684 (+) 339 WP_002777761.1 hypothetical protein -
  C9J81_RS06110 (C9J81_06115) - 1133693..1134418 (+) 726 WP_002806265.1 phosphatidate cytidylyltransferase -
  C9J81_RS06115 (C9J81_06120) dxr 1134415..1135491 (+) 1077 WP_107128071.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  C9J81_RS06120 (C9J81_06125) - 1135488..1136882 (+) 1395 WP_107128072.1 M99 family carboxypeptidase catalytic domain-containing protein -
  C9J81_RS06125 (C9J81_06130) tsaD 1136879..1137886 (+) 1008 WP_107128073.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  C9J81_RS06130 (C9J81_06135) ctsG 1137887..1138402 (+) 516 WP_107128074.1 type II secretion system protein Machinery gene
  C9J81_RS06135 (C9J81_06140) - 1138402..1139643 (+) 1242 WP_002882706.1 DUF2920 family protein -
  C9J81_RS06140 (C9J81_06145) - 1139653..1141470 (+) 1818 WP_107128075.1 motility associated factor glycosyltransferase family protein -
  C9J81_RS06145 (C9J81_06150) - 1141467..1143284 (+) 1818 WP_107128076.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18767.57 Da        Isoelectric Point: 5.2731

>NTDB_id=282136 C9J81_RS06130 WP_107128074.1 1137887..1138402(+) (ctsG) [Campylobacter coli strain CFSAN054106]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRTDFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=282136 C9J81_RS06130 WP_107128074.1 1137887..1138402(+) (ctsG) [Campylobacter coli strain CFSAN054106]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAACGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment