Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   C9J79_RS00990 Genome accession   NZ_CP028185
Coordinates   200935..202116 (-) Length   393 a.a.
NCBI ID   WP_057041182.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CFSAN054107     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195935..207116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J79_RS00960 (C9J79_00965) - 196480..196821 (+) 342 WP_002868232.1 hypothetical protein -
  C9J79_RS00965 (C9J79_00970) flgM 196884..197081 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  C9J79_RS00970 (C9J79_00975) - 197123..197557 (+) 435 WP_107131160.1 flagellar protein FlgN -
  C9J79_RS00975 (C9J79_00980) flgK 197567..199393 (+) 1827 WP_002858862.1 flagellar hook-associated protein FlgK -
  C9J79_RS00980 (C9J79_00985) - 199410..200174 (+) 765 WP_002851318.1 TIGR02757 family protein -
  C9J79_RS00985 (C9J79_00990) - 200178..200948 (+) 771 WP_002873601.1 TSUP family transporter -
  C9J79_RS00990 (C9J79_00995) ctsF 200935..202116 (-) 1182 WP_057041182.1 type II secretion system F family protein Machinery gene
  C9J79_RS00995 (C9J79_01000) ctsE 202113..203672 (-) 1560 WP_032601517.1 GspE/PulE family protein Machinery gene
  C9J79_RS01000 (C9J79_01005) ctsX 203662..204249 (-) 588 WP_002851370.1 membrane protein Machinery gene
  C9J79_RS01005 (C9J79_01010) ctsP 204253..204861 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  C9J79_RS01010 (C9J79_01015) ctsD 204854..206266 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  C9J79_RS01015 (C9J79_01020) ctsR 206244..206555 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45715.36 Da        Isoelectric Point: 8.8933

>NTDB_id=282100 C9J79_RS00990 WP_057041182.1 200935..202116(-) (ctsF) [Campylobacter jejuni strain CFSAN054107]
MKFYEVEFLKNNQNYTKTIKAENLNIAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=282100 C9J79_RS00990 WP_057041182.1 200935..202116(-) (ctsF) [Campylobacter jejuni strain CFSAN054107]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

99.746

0.982

Multiple sequence alignment