Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C9J84_RS07535 Genome accession   NZ_CP028183
Coordinates   1450598..1452289 (+) Length   563 a.a.
NCBI ID   WP_015454677.1    Uniprot ID   A0A463L4S4
Organism   Listeria monocytogenes strain CFSAN054109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1445598..1457289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J84_RS07505 (C9J84_07505) - 1445608..1445835 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  C9J84_RS07510 (C9J84_07510) - 1445838..1446719 (+) 882 WP_003732268.1 polyprenyl synthetase family protein -
  C9J84_RS07515 (C9J84_07515) - 1446918..1447118 (+) 201 WP_003719639.1 cold-shock protein -
  C9J84_RS07520 (C9J84_07520) dxs 1447285..1449114 (+) 1830 WP_072217202.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C9J84_RS07525 (C9J84_07525) - 1449111..1449935 (+) 825 WP_014601980.1 TlyA family RNA methyltransferase -
  C9J84_RS07530 (C9J84_07530) ahrC 1450126..1450575 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  C9J84_RS07535 (C9J84_07535) recN 1450598..1452289 (+) 1692 WP_015454677.1 DNA repair protein RecN Machinery gene
  C9J84_RS07540 (C9J84_07540) - 1452418..1453284 (+) 867 WP_003732271.1 phosphate acyltransferase -
  C9J84_RS07545 (C9J84_07545) buk 1453421..1454488 (+) 1068 WP_097516208.1 butyrate kinase -
  C9J84_RS07550 (C9J84_07550) lpdA 1454503..1455930 (+) 1428 WP_014600811.1 dihydrolipoyl dehydrogenase -
  C9J84_RS07555 (C9J84_07555) - 1455955..1456950 (+) 996 WP_003738888.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63531.39 Da        Isoelectric Point: 5.1936

>NTDB_id=282071 C9J84_RS07535 WP_015454677.1 1450598..1452289(+) (recN) [Listeria monocytogenes strain CFSAN054109]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDHLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAIFSVRFE
ANKMELTELGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGVEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=282071 C9J84_RS07535 WP_015454677.1 1450598..1452289(+) (recN) [Listeria monocytogenes strain CFSAN054109]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAGCTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGTATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGTCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATCAATGGCAAGCTTGTAACTACTGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGATTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATTGAGAAAGAATGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGCGCTTATGCGGCGATTCAAGGC
GAGCCAGGTGGACTTGAATTCGTTGGGGAAGCGATGCGTCAAATGGAGACAGCTGCAAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCTTCTAGCTACTATATGTTAGAAGATAGCATGAGCCAAATCAGACAGTCACTTGATCATCTCG
AATTCCAACCAGAAGAACTTAATCAAATTGAATCGCGTTTAAATGATTTAAACCAATTGAAACGCAAATATGGTAAAACA
ATTGAAGATATCATCCAGTATGAGCAAGAAATAAGTAGCGAAATGGAAAAACTAACGGATAGTGAATCGCATGTGGGTCA
TTTAGAGACAAAATTAGCCACACTCAAAACAGAACTAACAAAACAAGCAGCTACGCTCACTGATATCCGTAAAAAAGCAG
CTGTCACATTAGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAGAAAGCCATTTTTAGTGTGCGTTTTGAA
GCAAACAAAATGGAACTAACAGAATTGGGACAAGATAGCGTCGTCTTTTATATGTCAACAAATCCAGGAGAACCATTAAA
ACCATTAGCAAAAATTGCTTCTGGCGGAGAGTTATCCAGAATGATGTTAGCTTTAAAAACCATTTTCTCTAGACACCAAG
GTATTACATCAATTATTTTCGATGAAGTTGATACCGGAGTAAGTGGACGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTCGGCTCGCAAGTACTATGTATCAGTCATTTGCCTCAAGTAGCAGCAATGGCGAACCACCATTACTACAT
TACAAAAAAAGTCCAAAATAAACGTACAACGACTTCCGTTACAGTGCTTAAAGGAGTAGAAAAAGTAGAAGAAATCAGCC
GAATGATTGCTGGTATAGAAGTCACTGAACTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A463L4S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.604

100

0.538

Multiple sequence alignment