Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6648_RS25115 Genome accession   NZ_CP028169
Coordinates   4893148..4893753 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain CFSAN064034     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4888148..4898753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6648_RS25100 (C6648_25075) helD 4888365..4890419 (-) 2055 WP_000420500.1 DNA helicase IV -
  C6648_RS25105 (C6648_25080) - 4890543..4890989 (+) 447 WP_001261222.1 YccF domain-containing protein -
  C6648_RS25110 (C6648_25085) yccS 4891008..4893161 (+) 2154 WP_000950877.1 YccS family putative transporter -
  C6648_RS25115 (C6648_25090) sxy/tfoX 4893148..4893753 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  C6648_RS25120 (C6648_25095) sulA 4893970..4894479 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  C6648_RS25125 (C6648_25100) ompA 4894836..4895888 (+) 1053 WP_001670727.1 porin OmpA -
  C6648_RS25130 (C6648_25105) matP 4895960..4896412 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  C6648_RS25135 (C6648_25110) - 4896598..4898358 (+) 1761 WP_000156458.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=282008 C6648_RS25115 WP_001202375.1 4893148..4893753(-) (sxy/tfoX) [Salmonella enterica strain CFSAN064034]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=282008 C6648_RS25115 WP_001202375.1 4893148..4893753(-) (sxy/tfoX) [Salmonella enterica strain CFSAN064034]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment