Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6668_RS00840 Genome accession   NZ_CP028166
Coordinates   167792..168421 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CFSAN064036     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 162792..173421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6668_RS00815 (C6668_00815) ycbZ 163193..164953 (-) 1761 WP_000156518.1 Lon protease family protein -
  C6668_RS00820 (C6668_00820) matP 165139..165591 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6668_RS00825 (C6668_00825) ompA 165667..166707 (-) 1041 WP_000750416.1 porin OmpA -
  C6668_RS00835 (C6668_00835) sulA 167064..167573 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6668_RS00840 (C6668_00840) sxy/tfoX 167792..168421 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6668_RS00845 (C6668_00845) yccS 168384..170546 (-) 2163 WP_000875061.1 YccS family putative transporter -
  C6668_RS00850 (C6668_00850) yccF 170556..171002 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6668_RS00855 (C6668_00855) helD 171125..173179 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=281964 C6668_RS00840 WP_000839153.1 167792..168421(+) (sxy/tfoX) [Escherichia coli strain CFSAN064036]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=281964 C6668_RS00840 WP_000839153.1 167792..168421(+) (sxy/tfoX) [Escherichia coli strain CFSAN064036]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment