Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SPCG_RS02905 Genome accession   NC_010582
Coordinates   543611..543877 (+) Length   88 a.a.
NCBI ID   WP_001811621.1    Uniprot ID   -
Organism   Streptococcus pneumoniae CGSP14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 538611..548877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPCG_RS02885 (SPCG_0546) - 538822..539331 (+) 510 WP_000619950.1 N-acetyltransferase -
  SPCG_RS02890 (SPCG_0547) pheT 539408..541813 (+) 2406 WP_000961567.1 phenylalanine--tRNA ligase subunit beta -
  SPCG_RS02895 (SPCG_0548) - 541881..542882 (-) 1002 WP_000597968.1 endonuclease/exonuclease/phosphatase family protein -
  SPCG_RS02900 (SPCG_0549) - 543038..543526 (+) 489 Protein_550 transposase -
  SPCG_RS02905 (SPCG_0550) HI0659 543611..543877 (+) 267 WP_001811621.1 helix-turn-helix domain-containing protein Machinery gene
  SPCG_RS02910 (SPCG_0551) metE 544138..546387 (+) 2250 WP_000108198.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  SPCG_RS02915 (SPCG_0552) metF 546451..547317 (+) 867 WP_000089990.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9560.13 Da        Isoelectric Point: 4.8274

>NTDB_id=28190 SPCG_RS02905 WP_001811621.1 543611..543877(+) (HI0659) [Streptococcus pneumoniae CGSP14]
MEGCLSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEEVSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=28190 SPCG_RS02905 WP_001811621.1 543611..543877(+) (HI0659) [Streptococcus pneumoniae CGSP14]
TTGGAAGGATGTCTATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAAGTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment