Detailed information NTG0281861

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: EAH50_RS10815
• Genome accession: NZ_CP033096
• Coordinates: 1795731..1796207 (-)
• Length: 158 a.a.
• NCBI ID: WP_001186773.1
• Uniprot ID: -
• Organism: Escherichia coli strain CP53
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1790731..1801207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAH50_RS10765 (EAH50_10920)	sbmC	1791224..1791697 (+)	474	WP_122056916.1	DNA gyrase inhibitor SbmC	-
EAH50_RS10770 (EAH50_10925)	yeeA	1791895..1792953 (+)	1059	WP_001200905.1	FUSC family protein	-
EAH50_RS10775 (EAH50_10930)	tmaR	1793125..1793454 (+)	330	WP_000450409.1	DUF496 family protein	-
EAH50_RS10780 (EAH50_10935)	-	1793555..1793737 (-)	183	WP_001016348.1	EutP/PduV family microcompartment system protein	-
EAH50_RS10785 (EAH50_10940)	-	1793791..1793937 (+)	147	Protein_1687	transposase domain-containing protein	-
EAH50_RS10790 (EAH50_10945)	-	1794226..1794306 (-)	81	Protein_1688	hypothetical protein	-
EAH50_RS10795 (EAH50_10950)	yeeW	1794352..1794546 (-)	195	WP_000988599.1	DUF5983 family protein	-
EAH50_RS10800 (EAH50_10955)	-	1794608..1794916 (-)	309	Protein_1690	TA system toxin CbtA family protein	-
EAH50_RS10805 (EAH50_10960)	cbeA	1795005..1795373 (-)	369	WP_001285585.1	type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA	-
EAH50_RS10810 (EAH50_10965)	yeeT	1795447..1795668 (-)	222	WP_000692323.1	DUF987 domain-containing protein	-
EAH50_RS10815 (EAH50_10970)	radC	1795731..1796207 (-)	477	WP_001186773.1	RadC family protein	Machinery gene
EAH50_RS10820 (EAH50_10975)	-	1796223..1796702 (-)	480	WP_122056917.1	antirestriction protein	-
EAH50_RS10825 (EAH50_10980)	-	1796784..1797605 (-)	822	WP_001234530.1	DUF932 domain-containing protein	-
EAH50_RS10835 (EAH50_10990)	-	1797829..1798236 (-)	408	Protein_1696	hypothetical protein	-
EAH50_RS10840 (EAH50_10995)	-	1798252..1798935 (-)	684	WP_000775500.1	hypothetical protein	-
EAH50_RS10845 (EAH50_11000)	-	1799091..1799788 (+)	698	WP_094096600.1	IS1-like element IS1A family transposase	-
EAH50_RS25950 (EAH50_11005)	-	1799824..1799931 (+)	108	Protein_1699	cobalamin biosynthesis protein	-
EAH50_RS10855 (EAH50_11010)	cobU	1800083..1800628 (+)	546	WP_000973159.1	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	-

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 17688.29 Da
• Isoelectric Point: 7.2020

>NTDB_id=281861 EAH50_RS10815 WP_001186773.1 1795731..1796207(-) (radC) [Escherichia coli strain CP53]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide

• Length: 477 bp

>NTDB_id=281861 EAH50_RS10815 WP_001186773.1 1795731..1796207(-) (radC) [Escherichia coli strain CP53]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (38-157)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	54.867	71.519	0.392