Detailed information NTG0281847

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EAH50_RS07125
• Genome accession: NZ_CP033096
• Coordinates: 1036732..1037724 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CP53
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1031732..1042724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAH50_RS07095 (EAH50_07180)	ispD	1031793..1032503 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EAH50_RS07100 (EAH50_07185)	ispF	1032503..1032982 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EAH50_RS07105 (EAH50_07190)	truD	1032979..1034028 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EAH50_RS07110 (EAH50_07195)	surE	1034009..1034770 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EAH50_RS07115 (EAH50_07200)	pcm	1034764..1035390 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EAH50_RS07120 (EAH50_07205)	nlpD	1035575..1036669 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EAH50_RS07125 (EAH50_07210)	rpoS	1036732..1037724 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EAH50_RS07130 (EAH50_07215)	ygbN	1037818..1039182 (-)	1365	WP_000104429.1	GntP family transporter	-
EAH50_RS07135 (EAH50_07220)	ygbM	1039271..1040047 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
EAH50_RS07140 (EAH50_07225)	ygbL	1040052..1040690 (-)	639	WP_001278994.1	aldolase	-
EAH50_RS07145 (EAH50_07230)	otnK	1040687..1041949 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=281847 EAH50_RS07125 WP_000081550.1 1036732..1037724(+) (rpoS) [Escherichia coli strain CP53]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=281847 EAH50_RS07125 WP_000081550.1 1036732..1037724(+) (rpoS) [Escherichia coli strain CP53]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715