Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EAS44_RS22560 Genome accession   NZ_CP033092
Coordinates   4371787..4372263 (+) Length   158 a.a.
NCBI ID   WP_001186193.1    Uniprot ID   A0A0H2Z4W9
Organism   Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4366787..4377263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAS44_RS22530 (EAS44_13730) - 4367285..4368169 (+) 885 WP_001116794.1 GTPase family protein -
  EAS44_RS22535 (EAS44_13735) - 4368372..4369052 (+) 681 WP_001278649.1 WYL domain-containing protein -
  EAS44_RS22540 (EAS44_13740) - 4369203..4369880 (+) 678 WP_001097565.1 hypothetical protein -
  EAS44_RS22545 (EAS44_13745) - 4369886..4370119 (+) 234 WP_000883181.1 DUF905 family protein -
  EAS44_RS22550 (EAS44_13750) - 4370209..4371027 (+) 819 WP_001175155.1 DUF932 domain-containing protein -
  EAS44_RS22555 (EAS44_13755) - 4371293..4371772 (+) 480 WP_000706978.1 antirestriction protein -
  EAS44_RS22560 (EAS44_13760) radC 4371787..4372263 (+) 477 WP_001186193.1 JAB domain-containing protein Machinery gene
  EAS44_RS22565 (EAS44_13765) - 4372350..4372571 (+) 222 WP_000692347.1 DUF987 domain-containing protein -
  EAS44_RS22570 (EAS44_13770) - 4372651..4373019 (+) 369 WP_001285610.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EAS44_RS22575 (EAS44_13775) cbtA 4373108..4373485 (+) 378 WP_000854820.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EAS44_RS22580 (EAS44_13780) - 4373482..4373679 (+) 198 Protein_4224 DUF5983 family protein -
  EAS44_RS22585 (EAS44_13785) - 4373707..4373904 (+) 198 WP_085949158.1 DUF957 domain-containing protein -
  EAS44_RS22590 (EAS44_13790) - 4373989..4374549 (+) 561 Protein_4226 DUF4942 domain-containing protein -
  EAS44_RS25820 (EAS44_25790) - 4374965..4375124 (+) 160 Protein_4227 integrase -
  EAS44_RS22600 (EAS44_13800) cadC 4375384..4376922 (+) 1539 WP_001187191.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=281804 EAS44_RS22560 WP_001186193.1 4371787..4372263(+) (radC) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=281804 EAS44_RS22560 WP_001186193.1 4371787..4372263(+) (radC) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGTGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2Z4W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment