Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EAS44_RS21285 Genome accession   NZ_CP033092
Coordinates   4143070..4143546 (-) Length   158 a.a.
NCBI ID   WP_001186789.1    Uniprot ID   -
Organism   Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4138070..4148546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAS44_RS21260 (EAS44_12460) - 4139481..4139579 (-) 99 Protein_3978 TA system toxin CbtA family protein -
  EAS44_RS21265 (EAS44_12465) - 4139669..4140037 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EAS44_RS21270 (EAS44_12470) istA 4140280..4141821 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  EAS44_RS21275 (EAS44_12475) istB 4141836..4142582 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  EAS44_RS21280 (EAS44_12485) - 4142786..4143007 (-) 222 WP_000692333.1 DUF987 domain-containing protein -
  EAS44_RS21285 (EAS44_12490) radC 4143070..4143546 (-) 477 WP_001186789.1 JAB domain-containing protein Machinery gene
  EAS44_RS21290 (EAS44_12495) - 4143562..4144035 (-) 474 WP_001411480.1 antirestriction protein -
  EAS44_RS21300 (EAS44_12505) - 4144377..4145195 (-) 819 WP_001234651.1 DUF932 domain-containing protein -
  EAS44_RS21310 (EAS44_12515) - 4145313..4145508 (-) 196 Protein_3986 DUF905 family protein -
  EAS44_RS21315 (EAS44_12520) - 4145579..4148425 (-) 2847 WP_000820566.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17672.29 Da        Isoelectric Point: 7.5717

>NTDB_id=281802 EAS44_RS21285 WP_001186789.1 4143070..4143546(-) (radC) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
MQQLSFLPGNMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=281802 EAS44_RS21285 WP_001186789.1 4143070..4143546(-) (radC) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
ATGCAACAGCTTTCCTTTCTGCCCGGAAACATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment