Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LL14B4_RS00660 Genome accession   NZ_CP028160
Coordinates   130969..131757 (+) Length   262 a.a.
NCBI ID   WP_003129722.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 14B4     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 125969..136757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL14B4_RS00635 (LL14B4_00635) - 126337..127128 (+) 792 WP_033899177.1 DNA/RNA non-specific endonuclease -
  LL14B4_RS00640 (LL14B4_00640) - 127293..127502 (+) 210 WP_010905160.1 hypothetical protein -
  LL14B4_RS00645 (LL14B4_00645) - 127514..127753 (+) 240 WP_003129719.1 hypothetical protein -
  LL14B4_RS00650 (LL14B4_00650) - 127950..129533 (+) 1584 WP_033899174.1 APC family permease -
  LL14B4_RS00655 (LL14B4_00655) - 129602..130816 (+) 1215 WP_003129721.1 pyridoxal phosphate-dependent aminotransferase -
  LL14B4_RS00660 (LL14B4_00660) codY 130969..131757 (+) 789 WP_003129722.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LL14B4_RS00665 (LL14B4_00665) gatC 132323..132628 (+) 306 WP_010905163.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  LL14B4_RS00670 (LL14B4_00670) gatA 132628..134088 (+) 1461 WP_031559095.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  LL14B4_RS00675 (LL14B4_00675) - 134092..134694 (+) 603 WP_109990584.1 NUDIX hydrolase -
  LL14B4_RS00680 (LL14B4_00680) gatB 134734..136167 (+) 1434 WP_003129725.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29128.46 Da        Isoelectric Point: 4.5254

>NTDB_id=281793 LL14B4_RS00660 WP_003129722.1 130969..131757(+) (codY) [Lactococcus lactis subsp. lactis strain 14B4]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNDRVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDRPLAIFPEESLGDFPKGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLVLVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=281793 LL14B4_RS00660 WP_003129722.1 130969..131757(+) (codY) [Lactococcus lactis subsp. lactis strain 14B4]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACCGCGATTTTGCAAGATGGAGTGACCGATTTGCAACAAGAGTTGCC
ATATAACAGTATGACTGAACGCTTGGCAAACGTCATTGATTGCAATGCATGTGTGATTAATACGAAGGGCGAGTTGCTTG
GTTACTCATTGCCTTATAATACAAACAATGACCGTGTTGACCAATTTTTCTATGATCGTAAATTGCCTGATGAATATGTT
CGTGCGGCAGTACGTATCTACGATACAATGGCAAACGTTCCTGTTGACCGTCCATTAGCAATCTTCCCAGAAGAAAGCCT
TGGCGATTTTCCAAAAGGTGTGACAACTTTAGCACCTATTTATGGTTCTGGAATGCGTTTGGGAACATTTATCATGTGGC
GTGAAGACGGCGAATTCACTGATGATGATTTGGTCTTAGTTGAACTTGCAACAACAGTAATTGGTGTTCAACTCTCAAAT
CTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACCATGGCAACTATGGCTGTTAACACACTTTCATATTCAGA
AATGAAAGCTGTTAAAGCAATCATTGAAGAGCTTGATGGTGAAGAAGGGCATGTTATCGCTTCTGTCATTGCTGACAAGA
TTGGGATTACACGTTCAGTCATCGTTAACGCATTGCGTAAACTCGAATCTGCTGGTGTAATTGAATCACGTTCACTTGGT
ATGAAAGGAACTTATCTTAAAGTTCTTAATACTGGTTTATTTGATAAACTTGCAGGACGTAATTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(201-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  codY Bacillus subtilis subsp. subtilis str. 168

47.638

96.947

0.462

Multiple sequence alignment