Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EAS44_RS18315 Genome accession   NZ_CP033092
Coordinates   3512277..3512882 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3507277..3517882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAS44_RS18295 (EAS44_09415) aes 3507418..3508377 (+) 960 WP_000801795.1 acetyl esterase -
  EAS44_RS18300 (EAS44_09420) hemH 3508374..3509336 (-) 963 WP_001250129.1 ferrochelatase -
  EAS44_RS18305 (EAS44_09425) adk 3509468..3510112 (-) 645 WP_001331495.1 adenylate kinase -
  EAS44_RS18310 (EAS44_09435) htpG 3510293..3512167 (-) 1875 WP_000678211.1 molecular chaperone HtpG -
  EAS44_RS18315 (EAS44_09440) recR 3512277..3512882 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EAS44_RS18320 (EAS44_09445) ybaB 3512882..3513211 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EAS44_RS18325 (EAS44_09450) dnaX 3513264..3515195 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  EAS44_RS18330 (EAS44_09455) apt 3515324..3515875 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EAS44_RS18335 (EAS44_09460) ybaN 3516028..3516405 (-) 378 WP_001188900.1 DUF454 family protein -
  EAS44_RS18340 (EAS44_09465) priC 3516475..3517002 (+) 528 WP_000844868.1 primosomal replication protein N'' -
  EAS44_RS18345 (EAS44_09470) rsmS 3517016..3517177 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=281793 EAS44_RS18315 WP_001195025.1 3512277..3512882(-) (recR) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=281793 EAS44_RS18315 WP_001195025.1 3512277..3512882(-) (recR) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment