Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EAS44_RS10525 Genome accession   NZ_CP033092
Coordinates   1982403..1982879 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977403..1987879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAS44_RS10475 (EAS44_01410) sbmC 1977896..1978369 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  EAS44_RS10480 (EAS44_01415) yeeA 1978567..1979625 (+) 1059 WP_001200892.1 FUSC family protein -
  EAS44_RS10485 (EAS44_01420) tmaR 1979797..1980126 (+) 330 WP_000450409.1 DUF496 family protein -
  EAS44_RS10490 (EAS44_01425) - 1980227..1980409 (-) 183 WP_001016349.1 EutP/PduV family microcompartment system protein -
  EAS44_RS10495 (EAS44_01430) - 1980472..1980609 (+) 138 Protein_1888 transposase domain-containing protein -
  EAS44_RS10500 (EAS44_01435) - 1980898..1980990 (-) 93 Protein_1889 DUF957 domain-containing protein -
  EAS44_RS10505 (EAS44_01440) yeeW 1981024..1981218 (-) 195 WP_000988600.1 DUF5983 family protein -
  EAS44_RS10510 (EAS44_01445) cbtA 1981215..1981588 (-) 374 Protein_1891 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EAS44_RS10515 (EAS44_01450) cbeA 1981677..1982045 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EAS44_RS10520 (EAS44_01455) yeeT 1982119..1982340 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  EAS44_RS10525 (EAS44_01460) radC 1982403..1982879 (-) 477 WP_001186773.1 JAB domain-containing protein Machinery gene
  EAS44_RS10530 (EAS44_01465) - 1982895..1983374 (-) 480 WP_000860074.1 antirestriction protein -
  EAS44_RS10535 (EAS44_01470) - 1983456..1984274 (-) 819 WP_126160267.1 DUF932 domain-containing protein -
  EAS44_RS10540 (EAS44_01475) - 1984485..1984895 (-) 411 WP_000846713.1 hypothetical protein -
  EAS44_RS10545 (EAS44_01480) - 1984911..1985594 (-) 684 WP_001361977.1 hypothetical protein -
  EAS44_RS10550 (EAS44_01485) - 1985730..1986800 (-) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  EAS44_RS10555 (EAS44_01490) - 1986797..1987702 (-) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=281776 EAS44_RS10525 WP_001186773.1 1982403..1982879(-) (radC) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=281776 EAS44_RS10525 WP_001186773.1 1982403..1982879(-) (radC) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392