Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EAS44_RS10465 Genome accession   NZ_CP033092
Coordinates   1974975..1976402 (-) Length   475 a.a.
NCBI ID   WP_000980562.1    Uniprot ID   -
Organism   Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1969975..1981402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAS44_RS10435 (EAS44_01370) yeeZ 1970030..1970854 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  EAS44_RS10440 (EAS44_01375) yeeY 1970900..1971829 (+) 930 WP_025857311.1 LysR substrate-binding domain-containing protein -
  EAS44_RS10445 (EAS44_01380) yoeI 1972044..1972106 (+) 63 WP_010723108.1 membrane protein YoeI -
  EAS44_RS10450 (EAS44_01385) plaP 1972096..1973454 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EAS44_RS10455 (EAS44_01390) tsuA 1973633..1974691 (+) 1059 WP_000492334.1 thiosulfate utilization transporter TsuA/YeeE -
  EAS44_RS10460 (EAS44_01395) tsuB 1974705..1974932 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EAS44_RS10465 (EAS44_01400) sbcB 1974975..1976402 (-) 1428 WP_000980562.1 exodeoxyribonuclease I Machinery gene
  EAS44_RS10470 (EAS44_01405) dacD 1976611..1977777 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EAS44_RS10475 (EAS44_01410) sbmC 1977896..1978369 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  EAS44_RS10480 (EAS44_01415) yeeA 1978567..1979625 (+) 1059 WP_001200892.1 FUSC family protein -
  EAS44_RS10485 (EAS44_01420) tmaR 1979797..1980126 (+) 330 WP_000450409.1 DUF496 family protein -
  EAS44_RS10490 (EAS44_01425) - 1980227..1980409 (-) 183 WP_001016349.1 EutP/PduV family microcompartment system protein -
  EAS44_RS10495 (EAS44_01430) - 1980472..1980609 (+) 138 Protein_1888 transposase domain-containing protein -
  EAS44_RS10500 (EAS44_01435) - 1980898..1980990 (-) 93 Protein_1889 DUF957 domain-containing protein -
  EAS44_RS10505 (EAS44_01440) yeeW 1981024..1981218 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.82 Da        Isoelectric Point: 5.7523

>NTDB_id=281775 EAS44_RS10465 WP_000980562.1 1974975..1976402(-) (sbcB) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAKEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=281775 EAS44_RS10465 WP_000980562.1 1974975..1976402(-) (sbcB) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGAAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment