Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EAS44_RS06560 Genome accession   NZ_CP033092
Coordinates   1186949..1187464 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181949..1192464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAS44_RS06515 (EAS44_22090) csrA 1182803..1182988 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EAS44_RS06545 (EAS44_22120) yqaB 1184178..1184744 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EAS44_RS06550 (EAS44_22125) yqaA 1184741..1185169 (+) 429 WP_000005714.1 YqaA family protein -
  EAS44_RS06555 (EAS44_22130) gshA 1185242..1186798 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  EAS44_RS06560 (EAS44_22135) luxS 1186949..1187464 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EAS44_RS06565 (EAS44_22140) - 1187515..1188627 (-) 1113 WP_000638132.1 ATP-binding protein -
  EAS44_RS06570 (EAS44_22145) - 1188624..1189331 (-) 708 WP_001097119.1 RNA ligase family protein -
  EAS44_RS06575 (EAS44_22150) emrB 1189589..1191127 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  EAS44_RS06580 (EAS44_22155) emrA 1191144..1192316 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=281765 EAS44_RS06560 WP_001130211.1 1186949..1187464(+) (luxS) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=281765 EAS44_RS06560 WP_001130211.1 1186949..1187464(+) (luxS) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731