Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SEEERM4283_RS05890 Genome accession   NZ_CP028157
Coordinates   1037995..1038600 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Enteritidis strain RM4283     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032995..1043600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEEERM4283_RS05870 (SEEERM4283_05870) - 1033390..1035150 (-) 1761 WP_000156448.1 Lon protease family protein -
  SEEERM4283_RS05875 (SEEERM4283_05875) matP 1035336..1035788 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  SEEERM4283_RS05880 (SEEERM4283_05880) ompA 1035860..1036912 (-) 1053 WP_001674965.1 porin OmpA -
  SEEERM4283_RS05885 (SEEERM4283_05885) sulA 1037269..1037778 (-) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  SEEERM4283_RS05890 (SEEERM4283_05890) sxy/tfoX 1037995..1038600 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  SEEERM4283_RS05895 (SEEERM4283_05895) yccS 1038587..1040740 (-) 2154 WP_069057544.1 YccS family putative transporter -
  SEEERM4283_RS05900 (SEEERM4283_05900) - 1040759..1041205 (-) 447 WP_001261222.1 YccF domain-containing protein -
  SEEERM4283_RS05905 (SEEERM4283_05905) helD 1041329..1043383 (+) 2055 WP_000420505.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=281759 SEEERM4283_RS05890 WP_001202375.1 1037995..1038600(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain RM4283]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=281759 SEEERM4283_RS05890 WP_001202375.1 1037995..1038600(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Enteritidis strain RM4283]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment