Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   UTEX3055_RS13210 Genome accession   NZ_CP033061
Coordinates   2635256..2635990 (+) Length   244 a.a.
NCBI ID   WP_126148143.1    Uniprot ID   -
Organism   Synechococcus elongatus UTEX 3055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2630256..2640990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTEX3055_RS13185 - 2631094..2631633 (+) 540 WP_011242632.1 cytochrome b6-f complex iron-sulfur subunit -
  UTEX3055_RS13190 petA 2631679..2632653 (+) 975 WP_126148139.1 apocytochrome f -
  UTEX3055_RS13195 lgt 2632737..2633606 (+) 870 WP_126148140.1 prolipoprotein diacylglyceryl transferase -
  UTEX3055_RS13200 cobM 2633560..2634390 (+) 831 WP_126148141.1 precorrin-4 C(11)-methyltransferase -
  UTEX3055_RS13205 - 2634359..2635228 (-) 870 WP_126148142.1 DMT family transporter -
  UTEX3055_RS13210 ysxA/radC 2635256..2635990 (+) 735 WP_126148143.1 DNA repair protein RadC Machinery gene
  UTEX3055_RS13220 - 2636214..2637479 (-) 1266 WP_126148144.1 pitrilysin family protein -
  UTEX3055_RS13225 - 2637656..2638402 (+) 747 WP_126148145.1 phycocyanobilin:ferredoxin oxidoreductase -
  UTEX3055_RS13230 - 2638491..2639591 (+) 1101 WP_126148146.1 HlyD family efflux transporter periplasmic adaptor subunit -
  UTEX3055_RS13235 devC 2639575..2640753 (+) 1179 WP_126148147.1 ABC transporter permease DevC -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26314.30 Da        Isoelectric Point: 6.3868

>NTDB_id=281735 UTEX3055_RS13210 WP_126148143.1 2635256..2635990(+) (ysxA/radC) [Synechococcus elongatus UTEX 3055]
MATSGLRVADLPEDERPRERLMRSGASSLSTAELLAILLGTGQGPGGLSAVGLGQLLLSQLGEHQREPLRVLRQITVTEL
MQIPGIGPAKATAIAAAIELGKRIYQITTNELLPITSPEAAAKALSADLMWAEQERFALLLLDVRHNLLAQRVLTIGTAT
ETLANPREIFREALRLGATRLIVAHNHPSGQVDPSSADLSLTEQLLQLGQALELPVLDHLILGQGHHRSLRDTTGLWQKF
PQGD

Nucleotide


Download         Length: 735 bp        

>NTDB_id=281735 UTEX3055_RS13210 WP_126148143.1 2635256..2635990(+) (ysxA/radC) [Synechococcus elongatus UTEX 3055]
ATGGCGACTTCTGGTTTGCGCGTGGCTGATCTGCCCGAAGATGAGCGACCGCGGGAACGGCTGATGCGATCGGGAGCTAG
CAGCCTCTCGACGGCTGAACTGCTCGCGATCTTGTTAGGAACGGGACAAGGGCCGGGTGGATTGTCCGCCGTTGGGCTAG
GTCAACTGCTCCTCAGTCAGCTAGGAGAACACCAACGCGAACCGTTACGCGTCTTGCGGCAAATTACGGTTACTGAACTG
ATGCAAATTCCTGGAATTGGTCCAGCTAAGGCGACAGCGATCGCCGCTGCAATCGAATTGGGCAAGCGCATCTACCAAAT
CACGACGAATGAACTGCTGCCGATCACATCACCAGAAGCGGCAGCCAAAGCCCTCAGTGCGGATCTGATGTGGGCGGAGC
AGGAACGCTTTGCCCTGCTGCTGTTGGATGTTCGCCATAACCTCTTGGCCCAACGGGTGCTGACCATCGGGACCGCCACT
GAAACCTTGGCCAATCCCCGCGAAATTTTCCGAGAAGCCCTACGCCTCGGGGCAACCCGCTTGATCGTGGCCCACAACCA
TCCCTCCGGTCAGGTCGATCCCAGTAGCGCCGACTTGAGTTTGACGGAACAACTACTGCAACTCGGGCAAGCGCTGGAGC
TACCCGTGCTCGATCACCTCATTTTGGGCCAAGGACACCATCGCAGCTTGCGCGACACCACAGGGCTTTGGCAGAAATTT
CCACAGGGCGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(115-232)

UPF0758 N-terminal (UPF0758_N)

(9-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.767

93.033

0.361