Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C8114_RS13765 Genome accession   NZ_CP028149
Coordinates   3054835..3056196 (-) Length   453 a.a.
NCBI ID   WP_042259639.1    Uniprot ID   -
Organism   Clostridium perfringens strain JXJA17 isolate Intestine     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3049835..3061196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8114_RS13745 (C8114_13735) ispD 3051207..3051884 (-) 678 WP_003464566.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  C8114_RS13750 (C8114_13740) - 3051898..3053004 (-) 1107 WP_003452256.1 PIN/TRAM domain-containing protein -
  C8114_RS13755 (C8114_13745) - 3053316..3053717 (+) 402 WP_003452221.1 hypothetical protein -
  C8114_RS13760 (C8114_13750) disA 3053751..3054815 (-) 1065 WP_003452233.1 DNA integrity scanning diadenylate cyclase DisA -
  C8114_RS13765 (C8114_13755) radA 3054835..3056196 (-) 1362 WP_042259639.1 DNA repair protein RadA Machinery gene
  C8114_RS13770 (C8114_13760) nagB 3056448..3057176 (-) 729 WP_003452236.1 glucosamine-6-phosphate deaminase -
  C8114_RS13775 (C8114_13765) - 3057173..3057895 (-) 723 WP_003452208.1 GntR family transcriptional regulator -
  C8114_RS15325 - 3058095..3058259 (+) 165 WP_003452205.1 hypothetical protein -
  C8114_RS13780 (C8114_13770) - 3058353..3058580 (+) 228 WP_003452255.1 glutaredoxin family protein -
  C8114_RS13785 (C8114_13775) tnpA 3058758..3059228 (-) 471 WP_003448635.1 IS200/IS605 family transposase -
  C8114_RS13790 (C8114_13780) - 3059440..3060888 (-) 1449 WP_003452227.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  C8114_RS13795 (C8114_13785) - 3060905..3061138 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49871.62 Da        Isoelectric Point: 7.0588

>NTDB_id=281732 C8114_RS13765 WP_042259639.1 3054835..3056196(-) (radA) [Clostridium perfringens strain JXJA17 isolate Intestine]
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV
LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI
DKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLIQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP
RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAARLEKLVVVGEVGLTGE
IRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=281732 C8114_RS13765 WP_042259639.1 3054835..3056196(-) (radA) [Clostridium perfringens strain JXJA17 isolate Intestine]
GTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAAATGGATGGGTAAATGTCCAGAATG
TAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTTCTCCTAAGGTTGAAAGACAAATTG
GTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACTGGAATTGGTGAATTAAATAGAGTA
TTAGGTGGAGGGCTTGTTAAGGGGTCACTTACACTTATATCTGGTGACCCTGGAATAGGTAAATCTACACTTCTTTTACA
AACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGGGAAGAATCAGAAGAACAAATAAAAATAA
GAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAATCTTGATGTAATAGAAGCATATATA
GATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGAAACAGTTTCTTCAGCACCAGGAAG
TGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAAGGAAAAAATATTCCTTTATTTATAGTTGCTC
ACGTTACTAAGCAAGGGGATTTAGCAGGACCAAGAGTATTAGAACACATGGTGGATACTGTATTATCCTTTGAAGGGGAA
AGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGCTGAAATAGGTGTTTTTGAAATGCG
TGGAGAGGGATTAATTCAGGTTTATGATCCATCTAGCATGTTCTTAGAGGACACTAGTTTTAATCAAGAAGGGTCAGTTG
TAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCATCTGAAACAAAAGCAGTTATGCCT
AGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATTAGAAAAGAAATTAAGAGTTCCTTT
TTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTACAGCAGACTTAGGAATTGCCATTT
CACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGATTAGAAAAATTAGTTGTTGTAGGCGAGGTTGGGTTAACAGGTGAA
ATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATTTTTAAATGCAGTTGTTCCTTATAG
AAGTTTAGAAAAACTAAAGGGAAGTAAATTAAATCTTATAGGAGTAAAAACTGTAAGGGAAGCAATAGGAAAGATATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-426)

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

100

0.499
  radA Streptococcus pneumoniae Rx1

47.577

100

0.477
  radA Streptococcus pneumoniae D39

47.577

100

0.477
  radA Streptococcus pneumoniae R6

47.577

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.477
  radA Streptococcus mitis SK321

47.357

100

0.475
  radA Streptococcus mitis NCTC 12261

47.357

100

0.475

Multiple sequence alignment