Detailed information NTG0281726

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: UTEX3055_RS10530
• Genome accession: NZ_CP033061
• Coordinates: 2056824..2057786 (+)
• Length: 320 a.a.
• NCBI ID: WP_011378168.1
• Uniprot ID: Q31ME3
• Organism: Synechococcus elongatus UTEX 3055
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2051824..2062786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UTEX3055_RS14715	-	2051889..2052041 (+)	153	WP_011244647.1	hypothetical protein	-
UTEX3055_RS10495	-	2052032..2052496 (+)	465	WP_126147820.1	GNAT family N-acetyltransferase	-
UTEX3055_RS10500	-	2052616..2053368 (+)	753	WP_126147821.1	HEAT repeat domain-containing protein	-
UTEX3055_RS10505	-	2053608..2053811 (+)	204	WP_011244650.1	DUF2997 domain-containing protein	-
UTEX3055_RS10510	-	2053854..2054240 (+)	387	WP_011378170.1	DUF1257 domain-containing protein	-
UTEX3055_RS10515	-	2054240..2054632 (+)	393	WP_011244652.1	ferredoxin	-
UTEX3055_RS10520	-	2054635..2055396 (+)	762	WP_126147822.1	class I SAM-dependent methyltransferase	-
UTEX3055_RS10525	-	2055424..2056608 (+)	1185	WP_126147823.1	aldo/keto reductase	-
UTEX3055_RS10530	rpoS	2056824..2057786 (+)	963	WP_011378168.1	circadian expression RNA polymerase sigma factor SigA2	Regulator
UTEX3055_RS10535	-	2057993..2058538 (+)	546	WP_011378167.1	HPP family protein	-
UTEX3055_RS10540	-	2058553..2058963 (-)	411	WP_011244657.1	thioesterase family protein	-
UTEX3055_RS10545	-	2059110..2060294 (-)	1185	WP_011244658.1	NAD(P)H-quinone oxidoreductase subunit H	-
UTEX3055_RS10550	-	2060553..2061572 (-)	1020	WP_011378166.1	type I glyceraldehyde-3-phosphate dehydrogenase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 37124.28 Da
• Isoelectric Point: 6.8905

>NTDB_id=281726 UTEX3055_RS10530 WP_011378168.1 2056824..2057786(+) (rpoS) [Synechococcus elongatus UTEX 3055]
MSTSSAQYSPDLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIE
QGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTI
RLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQELLEDEQSSP
SDYVEQESLRRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSRLLAEYAAS

Nucleotide

• Length: 963 bp

>NTDB_id=281726 UTEX3055_RS10530 WP_011378168.1 2056824..2057786(+) (rpoS) [Synechococcus elongatus UTEX 3055]
ATGTCTACCTCCTCCGCTCAATACAGTCCTGATTTAGTCCGTGCTTACCTGCAAGAAATTGGCCGGGTGCGGCTGCTGAC
CGCTGAAGAAGAGTTGTGCTTTGGCCGACAAGTTCAGCGCCTGATGATGCTCTTGGATGCTCAAACCGAGCTGCGCGATC
GCTTGGGGCATGAGCCCAGCAAAGAAGAATGGGCTGCTGCTGTTGACCTGAATCTCGAAGATCTCGATCGCCAAATTGAG
CAAGGTCAGCGGGCGAAACGTAAAATGATTGAGGCCAACCTGCGCCTCGTTGTTTCGATCGCCAAGAAATACCAGAAGCG
TCACATGGAATTCTTGGATCTCATCCAAGAAGGCACACTGGGGCTGGAGCGTGGTGTCGAAAAATTCGATCCCTCCAAAG
GCTACAAGTTCTCTACCTATGCCTACTGGTGGATTCGCCAAGCCATTACCCGTGCGATCGCCCAACAATCCCGCACGATT
CGTCTGCCTATTCACATCACTGAAAAGCTGAACAAGCTCAAAAAAACCCAGCGCGAACTCTCGCAGCAATTGGGCCGCAG
TGCCACAGCTTCAGAGCTGGCAGAAGTGCTGGAGCTGCCACTGGAGCAGGTGCGGGAATACATCCAAATGAACCGCCAGC
CAGTATCGCTCGATGTCAAAGTAGGTGACAGCCAAGACACTGAATTGCAGGAACTGCTGGAAGACGAGCAGTCTTCGCCC
TCAGATTACGTGGAACAAGAATCGCTACGCCGCGATCTACGCAATTTAATGGCAGAACTGACCCCCCAGCAACAGGCCGT
GATTGCCCTGCGCTACGGCTTGGATGAAGGTGACAGTCTGTCGTTGGCCAAAGTCGGCGAACGCCTGAATATCAGCCGCG
AACGCGTGCGGAAACTAGAGCGCCAAGCCATGGATCACCTACGTCGCCGCAGTCGTCTTCTGGCGGAATACGCAGCTAGC
TAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (168-243)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (11-42)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: Q31ME3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	38.87	94.063	0.366