Detailed information NTG0281723

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: UTEX3055_RS08905
• Genome accession: NZ_CP033061
• Coordinates: 1727552..1728784 (+)
• Length: 410 a.a.
• NCBI ID: WP_011378299.1
• Uniprot ID: Q31LH0
• Organism: Synechococcus elongatus UTEX 3055
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1722552..1733784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UTEX3055_RS08890	grpE	1723468..1724091 (-)	624	WP_011378302.1	nucleotide exchange factor GrpE	-
UTEX3055_RS08895	pilB/pilB1	1724368..1726368 (+)	2001	WP_126147630.1	GspE/PulE family protein	Machinery gene
UTEX3055_RS08900	pilT	1726439..1727527 (+)	1089	WP_011378300.1	type IV pilus twitching motility protein PilT	Machinery gene
UTEX3055_RS08905	pilC	1727552..1728784 (+)	1233	WP_011378299.1	type II secretion system F family protein	Machinery gene
UTEX3055_RS08910	-	1728790..1729344 (+)	555	WP_011244335.1	hypothetical protein	-
UTEX3055_RS08915	-	1729309..1730556 (-)	1248	WP_126147631.1	NAD(P)/FAD-dependent oxidoreductase	-
UTEX3055_RS08920	dusA	1730583..1731614 (+)	1032	WP_126147632.1	tRNA dihydrouridine(20/20a) synthase DusA	-
UTEX3055_RS08925	-	1731711..1731965 (+)	255	WP_011378297.1	helix-hairpin-helix domain-containing protein	-
UTEX3055_RS08930	pheS	1732089..1733090 (-)	1002	WP_126147634.1	phenylalanine--tRNA ligase subunit alpha	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45123.05 Da
• Isoelectric Point: 9.1701

>NTDB_id=281723 UTEX3055_RS08905 WP_011378299.1 1727552..1728784(+) (pilC) [Synechococcus elongatus UTEX 3055]
MPTYVAQVRDSRGALRKQRIQAGNVREARVGLRQQGFLVQSIDESAGLSLGGLSSFNLEEATSKVTVKDMALFSRQLSSL
VDAGVPIVRALGLLTEQTRNPKLRKTLKQINIDVQEGLNLSDSMRKFPKVFDGLYVAMIQAGETGGVLDDVLNRLSKLLE
DMSRLRNQMKSAMTYPMAVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPGFTLLLLSISQLLRTPIFWGFFLIFLFGSI
FVFKQYYSTPPGRLSVDNLVLRLPVLGEMIQKAATARFCRTFGSLTRAGVPIMTALEIVRDTAGNQAIARSIDAARMEVQ
TGGMMSVALSRYRVFPLMALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLP
MFSIFDQIKG

Nucleotide

• Length: 1233 bp

>NTDB_id=281723 UTEX3055_RS08905 WP_011378299.1 1727552..1728784(+) (pilC) [Synechococcus elongatus UTEX 3055]
ATGCCGACATATGTTGCTCAGGTTCGTGATAGCCGAGGAGCTCTTCGCAAGCAGCGCATCCAAGCGGGAAATGTTCGTGA
AGCGCGGGTTGGATTGCGCCAGCAAGGGTTTTTGGTTCAGTCAATCGATGAGTCTGCTGGATTGTCGCTGGGCGGGTTAA
GTAGTTTTAATCTCGAAGAAGCGACGAGTAAGGTCACTGTCAAAGACATGGCCCTTTTCTCGCGGCAGCTTTCATCCTTG
GTAGATGCGGGGGTTCCAATTGTTAGAGCCCTAGGATTGCTGACTGAACAGACACGTAATCCCAAGCTTCGTAAAACCCT
GAAGCAGATTAATATCGATGTGCAAGAGGGCTTAAATCTCTCGGACTCGATGCGTAAGTTCCCGAAAGTTTTCGATGGTC
TCTACGTAGCGATGATTCAAGCTGGAGAGACAGGTGGCGTCTTAGATGACGTCCTCAACCGGCTTTCCAAACTACTGGAA
GATATGTCGAGATTGCGCAACCAGATGAAGTCTGCAATGACTTATCCGATGGCAGTCTTTGTGATTGCAATTCTTGTGTT
TTTAGGGATGACTATTTTTATCATTCCAACCTTCGCAGGAATCTTTGAAGACCAAGGGGCGGAGTTGCCTGGTTTCACGC
TGCTGTTGCTGTCAATTAGCCAGCTGTTGAGAACACCGATCTTTTGGGGCTTCTTCCTGATCTTTCTATTTGGATCAATT
TTTGTCTTTAAACAATACTATTCAACTCCACCTGGCCGCCTCAGTGTAGACAACCTAGTGCTACGCCTGCCAGTTTTGGG
AGAGATGATTCAGAAGGCTGCCACAGCTCGCTTCTGCCGAACCTTTGGTTCACTCACAAGGGCAGGGGTGCCGATTATGA
CTGCTCTTGAAATCGTGCGAGATACCGCAGGGAATCAGGCGATCGCTCGCTCAATCGATGCAGCCCGGATGGAAGTACAG
ACTGGCGGCATGATGAGTGTAGCGCTGTCGAGATATCGGGTCTTCCCTTTGATGGCTCTCAGCATGATTACGATTGGGGA
AGAGACGGGTGAACTTGACACCATGGTGAACAAAGTGGCTGACTTCTATGAAGATGAAGTCGAGCAAGCGGTCAAGGGTT
TGACCAGTTTGTTAGAGCCGATCATGATTGTGCTGGTAGGCGGTATTGTCGGCTCGATTTTGCTGGCGATGTATCTGCCA
ATGTTCAGCATTTTCGACCAGATTAAGGGGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

3D structure

• AlphaFold DB: Q31LH0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	42.469	98.78	0.42