Detailed information    

insolico Bioinformatically predicted

Overview


Name   comS   Type   Regulator
Locus tag   C9I27_RS10305 Genome accession   NZ_CP028148
Coordinates   53840..53935 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TJ11-001     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context


Location: 48840..58935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I27_RS00320 - 49711..51051 (+) 1341 WP_002987721.1 hypothetical protein -
  C9I27_RS00325 purB 51420..52712 (+) 1293 WP_002987723.1 adenylosuccinate lyase -
  C9I27_RS00330 comR 52845..53756 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  C9I27_RS10305 comS 53840..53935 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  C9I27_RS00335 ruvB 53982..54980 (+) 999 WP_002987726.1 Holliday junction branch migration DNA helicase RuvB -
  C9I27_RS00340 - 55118..55555 (+) 438 WP_002987727.1 low molecular weight protein-tyrosine-phosphatase -
  C9I27_RS00345 - 55579..55980 (+) 402 WP_002987730.1 MORN repeat-containing protein -
  C9I27_RS00350 - 55977..57752 (+) 1776 WP_002987732.1 acyltransferase family protein -

Sequence


Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=281717 C9I27_RS10305 WP_198462994.1 53840..53935(+) (comS) [Streptococcus pyogenes strain TJ11-001]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=281717 C9I27_RS10305 WP_198462994.1 53840..53935(+) (comS) [Streptococcus pyogenes strain TJ11-001]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1

  comS Streptococcus pyogenes MGAS315

45.161

100

0.452


Multiple sequence alignment