Detailed information NTG0281687

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: UTEX3055_RS00055
• Genome accession: NZ_CP033061
• Coordinates: 11267..13891 (-)
• Length: 874 a.a.
• NCBI ID: WP_039755993.1
• Uniprot ID: P53533
• Organism: Synechococcus elongatus UTEX 3055
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 6267..18891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UTEX3055_RS14520	-	6672..6848 (+)	177	WP_161565855.1	hypothetical protein	-
UTEX3055_RS00035	-	6848..7984 (+)	1137	WP_126146581.1	anhydro-N-acetylmuramic acid kinase	-
UTEX3055_RS00040	-	7965..8624 (+)	660	WP_126146582.1	class I SAM-dependent methyltransferase	-
UTEX3055_RS14660	-	8816..8986 (-)	171	WP_192893933.1	hypothetical protein	-
UTEX3055_RS00045	-	9093..10256 (-)	1164	WP_126146583.1	SAM-dependent methyltransferase	-
UTEX3055_RS00050	-	10354..11151 (+)	798	WP_011242771.1	TPM domain-containing protein	-
UTEX3055_RS00055	clpC	11267..13891 (-)	2625	WP_039755993.1	ATP-dependent chaperone ClpB	Regulator
UTEX3055_RS00060	petE	14058..14435 (-)	378	WP_011242773.1	plastocyanin	-
UTEX3055_RS00065	-	14464..15438 (-)	975	WP_011242774.1	NAD(P)-dependent oxidoreductase	-
UTEX3055_RS00070	hemE	15460..16524 (-)	1065	WP_011242775.1	uroporphyrinogen decarboxylase	-

Sequence

Protein

• Length: 874 a.a.
• Molecular weight: 98726.48 Da
• Isoelectric Point: 5.0150

>NTDB_id=281687 UTEX3055_RS00055 WP_039755993.1 11267..13891(-) (clpC) [Synechococcus elongatus UTEX 3055]
MQPTNPNQFTEKAWEAIVRTTDVAKQAQHQQIESEHLFLALLQEPGLALNILKKAGLEAAQLQQFTERFIARQPKVSGGN
QSVYLGRSLDQLLDQADQFRKDFGDEFISVEHLILSFPRDSRFGRLLSQEFKVDEKQLRQIIQQIRGSQKVTDQNPEGKY
EALEKYGRDLTEMARRGKLDPVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGDVPQSLKDRRLI
ALDMGALIAGAKFRGEFEERLKAVLKEVTDSEGIIILFIDEIHTVVGAGAVQGSMDAGNLLKPMLARGELRCIGATTLDE
YRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLSTRYISDRFLPDKAIDLVDESA
ARLKMEITSKPEELDEIDRKILQLEMERLSLQKESDLASQERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEE
IDQVNLLIQQAERDYDLNKAAELKYGKLTELQRKLNEMEGGLATTHTSGKSLLREEVTEVDIAEIISKWTGIPVSKLVES
EMQKLLNLDEELHQRVIGQEEAVSAVADAIQRSRAGLSDPKRPIASFIFLGPTGVGKTELAKALAAYLFDTEDAMIRIDM
SEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTIL
ILTSNIGSQYILDVAGDDSRYEEMRSRVTEALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSL
SMSPEAIDFLVEIGFDPVYGARPLKRVIQRELETAIAKAILRGQFSDGDTIQVAVENERLVFKAIATPTAVPLS

Nucleotide

• Length: 2625 bp

>NTDB_id=281687 UTEX3055_RS00055 WP_039755993.1 11267..13891(-) (clpC) [Synechococcus elongatus UTEX 3055]
ATGCAACCGACGAATCCCAATCAATTTACTGAAAAAGCCTGGGAAGCGATCGTTCGCACAACTGATGTTGCGAAACAAGC
TCAGCATCAGCAAATTGAATCAGAACATCTGTTTTTGGCCTTGCTTCAAGAACCAGGGCTGGCTCTGAATATCCTCAAGA
AAGCAGGGTTAGAAGCGGCACAACTACAGCAGTTTACAGAGCGGTTTATTGCCCGCCAGCCAAAGGTGAGTGGGGGTAAT
CAGTCGGTTTATCTGGGGCGATCGCTCGATCAACTCCTCGATCAGGCGGATCAGTTTCGCAAGGACTTTGGGGATGAATT
TATTTCGGTTGAGCACCTCATCCTCAGCTTTCCCCGTGATTCCCGTTTTGGGCGCTTGCTCAGTCAAGAATTCAAGGTTG
ACGAGAAGCAGCTCCGTCAGATTATTCAACAGATTCGAGGCAGCCAAAAAGTGACTGATCAAAACCCTGAAGGTAAATAC
GAAGCCCTCGAAAAATATGGGCGTGACCTGACTGAAATGGCGCGTCGTGGCAAGCTCGATCCCGTCATTGGCCGCGATGA
TGAAATCCGTCGCACTATTCAGATTCTCAGTCGGCGCACCAAGAATAATCCGGTCTTGATTGGCGAGCCTGGGGTTGGCA
AAACTGCGATCGCAGAAGGATTAGCCCAGCGGATTATTAATGGTGATGTCCCGCAATCCCTCAAGGATCGGCGGCTGATT
GCTTTGGACATGGGTGCCTTAATTGCAGGTGCTAAATTCCGGGGTGAGTTTGAAGAACGCCTGAAAGCAGTCCTCAAGGA
AGTCACTGACTCTGAAGGCATCATTATCCTCTTTATTGATGAGATTCATACGGTGGTTGGTGCTGGAGCGGTCCAAGGCT
CCATGGATGCTGGCAACTTACTGAAGCCGATGCTGGCGCGGGGAGAATTGCGCTGTATTGGGGCAACCACACTAGATGAA
TATCGCCAATATATTGAGAAGGATGCGGCTCTTGAACGACGCTTCCAACAGGTCTTTGTCGATCAACCTACGGTAGAAGA
TACGATCTCGATTTTGCGTGGCTTAAAAGAGCGCTATGAAGTGCATCATGGCGTCCGTATTTCTGACAACGCTCTTGTCG
CTGCTGCTGTCCTCTCGACCCGCTACATCAGCGATCGCTTCTTGCCAGATAAGGCGATTGATTTAGTCGATGAGTCGGCG
GCTCGACTCAAGATGGAAATCACTTCAAAGCCAGAAGAATTAGATGAGATCGATCGCAAGATTCTCCAGCTCGAAATGGA
ACGACTCTCCTTGCAAAAAGAGAGTGATCTTGCCTCACAGGAACGTCTGCAACGGCTAGAAAAAGAGTTGGCCGACCTAA
AAGAAGAGCAGCGGAGTTTAAGCAGTCAATGGCAAGCTGAAAAGGATGTTATTACTGATATCCAATCCGTCAAGGAAGAG
ATTGATCAGGTTAACTTGCTAATTCAACAGGCAGAGCGAGATTACGACCTGAACAAAGCAGCTGAGCTGAAGTACGGCAA
ACTGACAGAACTGCAGCGCAAGCTCAACGAAATGGAGGGCGGTTTAGCGACGACCCACACCAGTGGCAAGTCTCTGCTGC
GCGAAGAAGTGACAGAGGTTGACATTGCTGAAATCATCTCTAAGTGGACGGGGATTCCTGTCAGCAAGCTGGTTGAGTCA
GAGATGCAAAAGCTCCTCAACCTCGATGAAGAACTGCATCAACGGGTGATTGGCCAAGAAGAAGCGGTTTCTGCTGTCGC
GGATGCAATTCAGCGATCGCGAGCTGGGTTGTCTGATCCGAAACGCCCGATCGCGAGCTTCATCTTCTTGGGCCCTACAG
GGGTTGGTAAAACCGAGTTGGCCAAAGCCCTAGCTGCCTATCTCTTCGACACTGAAGACGCGATGATTCGCATTGATATG
TCGGAGTACATGGAGAAACACGCGGTTTCGCGGCTAATCGGCGCGCCTCCGGGCTACGTCGGCTATGACGAAGGCGGCCA
ACTCACGGAAGCGGTGCGGCGGCGTCCCTATTCCGTCATCCTCTTTGATGAGATTGAGAAGGCCCATCCAGATGTCTTCA
ACGTCATGTTGCAGATTCTCGATGATGGTCGAGTCACCGATAGCCGCGGCCGAACAGTGGACTTCAAGAATACAATCTTG
ATTTTGACCAGCAATATCGGTTCGCAATACATTCTCGATGTGGCTGGCGATGACAGCCGCTACGAAGAAATGCGGAGCCG
TGTCACCGAAGCACTGCGGGCTAATTTCCGACCGGAATTTCTGAATCGGGTCGATGAGACAATCATCTTCCACAGCCTGC
GCAAGGATCAGTTGCAGCAGATTGTGCGGATTCAACTGCATCGCCTTGAAGAACGATTGAGCGATCGCAAGTTATCGCTG
TCGATGAGTCCAGAAGCGATCGATTTCTTGGTTGAGATTGGTTTTGATCCCGTCTATGGAGCTCGTCCGCTCAAACGAGT
CATTCAGCGAGAGTTGGAAACTGCGATCGCTAAGGCGATCCTCAGGGGGCAATTCAGTGATGGCGACACGATTCAAGTTG
CTGTGGAGAATGAACGACTCGTCTTTAAGGCGATCGCAACTCCAACTGCGGTTCCCCTGAGCTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (773-853)

• AAA lid domain (AAA_lid_9) (344-446)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-766)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-147)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (23-70)

• ATPase family associated with various cellular activities (AAA) (AAA) (205-337)

3D structure

• AlphaFold DB: P53533

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.483	100	0.475
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.445	99.199	0.421
clpE	Streptococcus pneumoniae TIGR4	49.267	78.032	0.384
clpE	Streptococcus pneumoniae Rx1	48.902	78.146	0.382
clpE	Streptococcus pneumoniae D39	48.902	78.146	0.382
clpE	Streptococcus pneumoniae R6	48.902	78.146	0.382