Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   SAURJH9_RS00255 Genome accession   NC_009487
Coordinates   57071..58699 (-) Length   542 a.a.
NCBI ID   WP_001186601.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JH9     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 38743..60070 57071..58699 within 0


Gene organization within MGE regions


Location: 38743..60070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAURJH9_RS00160 (SaurJH9_0029) mecA 38743..40752 (-) 2010 WP_001801873.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -
  SAURJH9_RS00165 (SaurJH9_0030) mecR1 40849..42606 (+) 1758 WP_000952923.1 beta-lactam sensor/signal transducer MecR1 -
  SAURJH9_RS00170 (SaurJH9_0031) mecI 42606..42977 (+) 372 WP_000369214.1 mecA-type methicillin resistance repressor MecI -
  SAURJH9_RS15775 psm-mec 43062..43130 (-) 69 WP_014532405.1 phenol-soluble modulin PSM-mec -
  SAURJH9_RS00175 (SaurJH9_0032) - 43464..44594 (+) 1131 WP_010922808.1 ROK family transcriptional regulator -
  SAURJH9_RS00185 (SaurJH9_0033) cstB 44708..46042 (-) 1335 Protein_34 persulfide dioxygenase-sulfurtransferase CstB -
  SAURJH9_RS00190 (SaurJH9_0035) - 46075..47139 (-) 1065 WP_000438836.1 DsrE/DsrF/DrsH-like family protein -
  SAURJH9_RS00195 (SaurJH9_0036) cstR 47275..47535 (+) 261 WP_000220507.1 persulfide-sensing transcriptional repressor CstR -
  SAURJH9_RS00200 (SaurJH9_0037) - 47535..48173 (+) 639 Protein_37 sulfite exporter TauE/SafE family protein -
  SAURJH9_RS00205 (SaurJH9_0038) - 48518..49180 (-) 663 WP_001092058.1 class I SAM-dependent methyltransferase -
  SAURJH9_RS16175 - 49572..49628 (+) 57 WP_176746567.1 erythromycin resistance leader peptide -
  SAURJH9_RS00210 (SaurJH9_0039) erm(A) 49676..50407 (+) 732 WP_001072201.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) -
  SAURJH9_RS00215 (SaurJH9_0040) - 50533..51315 (-) 783 WP_000067268.1 aminoglycoside nucleotidyltransferase ANT(9)-Ia -
  SAURJH9_RS00220 (SaurJH9_0041) - 51466..51843 (-) 378 WP_000361059.1 DUF6262 family protein -
  SAURJH9_RS00225 (SaurJH9_0042) - 51850..53742 (-) 1893 WP_001557544.1 site-specific integrase -
  SAURJH9_RS00230 (SaurJH9_0043) - 53739..54824 (-) 1086 WP_000868132.1 tyrosine-type recombinase/integrase -
  SAURJH9_RS00235 (SaurJH9_0044) - 54943..55260 (-) 318 WP_000659050.1 JAB domain-containing protein -
  SAURJH9_RS00240 (SaurJH9_0045) - 55281..55787 (-) 507 WP_001092169.1 DUF1643 domain-containing protein -
  SAURJH9_RS00245 (SaurJH9_0046) - 55805..56116 (-) 312 WP_000700853.1 DUF960 family protein -
  SAURJH9_RS00250 (SaurJH9_0047) - 56203..56553 (-) 351 WP_000859155.1 SAUGI family uracil-DNA glycosylase inhibitor -
  SAURJH9_RS00255 (SaurJH9_0048) ccrB 57071..58699 (-) 1629 WP_001186601.1 cassette chromosome recombinase CcrB Machinery gene
  SAURJH9_RS00260 (SaurJH9_0049) ccrA 58721..60070 (-) 1350 WP_000815646.1 cassette chromosome recombinase CcrA Machinery gene

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62678.86 Da        Isoelectric Point: 9.8600

>NTDB_id=28168 SAURJH9_RS00255 WP_001186601.1 57071..58699(-) (ccrB) [Staphylococcus aureus subsp. aureus JH9]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRILKDAKEGYIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEINTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYD
EVQIKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=28168 SAURJH9_RS00255 WP_001186601.1 57071..58699(-) (ccrB) [Staphylococcus aureus subsp. aureus JH9]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAATCGACCTGAGCTCCAACGTATATTGAAGGATGCGAAAGAAGGCTATATCGACTGTGTTATG
GTCTACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAATCAATACTTCATCGGGTAAGCTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTGGGCTATGACAAAATACCTAATAGTAAACATGAACTGATGATTAATCAACATGAAGCTAATATTGTGAAATA
TATATTCGAGTCCTATGCCAAAGGCCATGGCTATCGTAAAATAGCCAATGCATTAAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTTAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACACTTAAAGAC
GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG
TAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGCCTT
TATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATAAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTGTTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

99.815

100

0.998

Multiple sequence alignment