Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   C9I78_RS25170 Genome accession   NZ_CP028142
Coordinates   1663741..1664838 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain R14     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658741..1669838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I78_RS25140 (C9I78_25135) - 1660101..1661294 (-) 1194 WP_025548778.1 ISL3 family transposase -
  C9I78_RS25145 (C9I78_25140) - 1661388..1661702 (-) 315 WP_005453573.1 DUF496 family protein -
  C9I78_RS25155 (C9I78_25150) - 1662030..1662245 (+) 216 WP_005477197.1 hypothetical protein -
  C9I78_RS25160 (C9I78_25155) - 1662422..1663072 (+) 651 WP_108745431.1 YceH family protein -
  C9I78_RS25165 (C9I78_25160) - 1663069..1663389 (+) 321 WP_108745432.1 GIY-YIG nuclease family protein -
  C9I78_RS25170 (C9I78_25165) luxP 1663741..1664838 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  C9I78_RS25175 (C9I78_25170) luxQ 1664838..1667414 (+) 2577 WP_005463469.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  C9I78_RS25180 (C9I78_25175) - 1667626..1668081 (+) 456 WP_005477342.1 MarR family transcriptional regulator -
  C9I78_RS25185 (C9I78_25180) - 1668119..1669174 (+) 1056 WP_020838057.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=281661 C9I78_RS25170 WP_005463467.1 1663741..1664838(+) (luxP) [Vibrio parahaemolyticus strain R14]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=281661 C9I78_RS25170 WP_005463467.1 1663741..1664838(+) (luxP) [Vibrio parahaemolyticus strain R14]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTTCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTGCCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGACATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
CTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment