Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   At12D1_RS13825 Genome accession   NZ_CP033031
Coordinates   2773710..2775518 (+) Length   602 a.a.
NCBI ID   WP_080865671.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 12D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2768710..2780518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At12D1_RS13825 (At12D1_26420) recQ 2773710..2775518 (+) 1809 WP_080865671.1 DNA helicase RecQ Machinery gene
  At12D1_RS13830 (At12D1_26430) - 2775577..2776809 (-) 1233 WP_080865672.1 ROK family transcriptional regulator -
  At12D1_RS13835 (At12D1_26440) - 2777073..2778095 (+) 1023 WP_003507133.1 sugar ABC transporter substrate-binding protein -
  At12D1_RS13840 (At12D1_26450) - 2778324..2779406 (+) 1083 WP_003507134.1 ABC transporter permease -
  At12D1_RS13845 (At12D1_26460) - 2779406..2780188 (+) 783 WP_003507135.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67068.79 Da        Isoelectric Point: 6.3339

>NTDB_id=281635 At12D1_RS13825 WP_080865671.1 2773710..2775518(+) (recQ) [Agrobacterium tumefaciens strain 12D1]
MTADPLHILKTVYGYDVFRGRQAEIIQHVVAGNNAFVLMPTGGGKSLCYQIPALARDGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWRDMRAGKVDILYAAPETLLKPDVLDALQPIALSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADGPTRTEILGHLGIEEDDAFIAGFDRPNIRYAIMEKDNPRAQLKRFLKDRDSESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETASCRRQVLLSYFGDRCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRMIEVDLSG
HGGLSISEDGRRFLREKPALMLRIPSAPRSARQQTPRNTVSTILPEADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELATAKPVSAKEMAGIPGVGDTKLERYGPAFLAAIMQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=281635 At12D1_RS13825 WP_080865671.1 2773710..2775518(+) (recQ) [Agrobacterium tumefaciens strain 12D1]
GTGACCGCTGATCCCTTGCACATCCTCAAGACCGTCTATGGCTACGATGTGTTTCGTGGGCGGCAGGCCGAAATCATCCA
GCACGTGGTGGCGGGCAATAATGCTTTCGTTTTGATGCCGACAGGTGGTGGGAAGTCGCTTTGTTACCAGATTCCAGCGC
TTGCACGCGACGGTATGGGGCTGATCGTCTCGCCGCTCATCGCGCTGATGGTCGATCAGGTCGCTGCCCTGCGTCAGGCG
GGCGTGCGGGCAGAGGCTCTTAATTCCGATCTCTCTCCGGAAGAGCGGCGCGCGCTCTGGCGGGATATGCGGGCCGGTAA
AGTCGACATTCTTTATGCCGCACCGGAAACCCTTCTCAAGCCGGATGTCCTGGACGCCCTCCAGCCCATTGCCCTGTCGC
TGATCGCTATCGATGAAGCCCATTGCCTGTCTCAATGGGGGCATGATTTCCGGCCACCTTACCGCCAGCTTGATACGCTG
ATCGAGCGTTTTCCCGACACGCCACGCATGGCGCTGACAGCAACGGCCGATGGGCCTACGCGCACCGAAATTCTCGGTCA
CCTGGGAATCGAAGAGGATGACGCCTTCATCGCCGGCTTCGATAGGCCCAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCACGCGCGCAGCTGAAGCGCTTTTTGAAGGACCGCGACAGTGAAAGCGGGATCGTCTATTGCCTTTCCAAACGGAAG
GTGGACGAAACGGCCGCATGGCTGCGGGAGGAGGGGCGCGATGCACTGCCCTATCACGCTGGGATGGACAAGGCCGCCCG
CGAGGAGAACCAGACCCGTTTCCAGCACGGCGAGGCGGTCATCATTGTCGCGACCGTCGCTTTTGGCATGGGCATAGACA
AGCCCGATGTGCGCTTCGTCGTTCATATTGATCTGCCCGGCAGCATCGAAGCCTATTATCAGGAAACGGGCCGAGCCGGC
CGCGATGGTCTGCCATCGGACGTACTCATGCTCTACGGTTACGAAGACATCGCCCTGCGCAACCGCTTTATCGAAGAGTC
GGATGCTGCGGACCAGCGCAAATATATGGAGCGCCAGAAGCTTGACGCGCTGCTCGGCCTTGCGGAAACCGCGAGCTGCC
GCAGGCAGGTTCTGCTGTCCTATTTCGGCGACCGGTGTGAGCCCTGCGGCAATTGCGATACCTGCGCCGAGCCGCCCGAC
CTGTTTGACGGGGCCATAGCCGCACAGAAGCTTCTGTCCTGCATTTATCGCACGGGTGAACGTTTTGGCCAGGCCTATGT
CATCCGCGTGTTGCTGGGTGTCGAGGATGAGCGGATTTCCCGCTTCGGACATGATCGCATCACGACATACGGTATAGGCA
AGGAACATGACAATCGCACCTGGCGCGCCATTCTGCGTCAACTGGTTGCGTTACGCATGATTGAAGTGGATCTGTCCGGG
CATGGTGGACTGTCCATTTCCGAGGACGGACGGCGTTTCCTGCGCGAAAAACCTGCGTTGATGCTGAGGATACCATCTGC
TCCGCGTTCCGCCCGGCAACAGACGCCCCGCAACACGGTATCGACGATTTTGCCTGAAGCTGATCGCAGTCTTTTTGAGG
CACTGCGTGCGAAGCGCATGGAAATTGCCCGTGCGCAGAACGTTCCGCCCTATGTGATTTTCCACGACAAGACCCTGATA
GAACTTGCCACGGCAAAACCGGTCTCCGCGAAGGAAATGGCTGGGATTCCCGGCGTCGGAGACACCAAGCTGGAGCGCTA
CGGGCCAGCCTTTCTGGCGGCGATCATGCAGCACGCCGCTGGCGAGTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(398-509)

Helicase conserved C-terminal domain (Helicase_C)

(219-322)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

HRDC domain (HRDC)

(530-595)

DEAD/DEAH box helicase (DEAD)

(22-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.584

99.003

0.372

Multiple sequence alignment