Detailed information NTG0281628

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C9I78_RS02345
• Genome accession: NZ_CP028141
• Coordinates: 456353..457342 (+)
• Length: 329 a.a.
• NCBI ID: WP_162597300.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain R14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 451353..462342

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C9I78_RS02310 (C9I78_02310)	ftsB	451361..451642 (+)	282	WP_005455577.1	cell division protein FtsB	-
C9I78_RS02315 (C9I78_02315)	ispD	451644..452348 (+)	705	WP_025546668.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C9I78_RS02320 (C9I78_02320)	ispF	452366..452842 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C9I78_RS02325 (C9I78_02325)	truD	452889..453932 (+)	1044	WP_024702352.1	tRNA pseudouridine(13) synthase TruD	-
C9I78_RS02330 (C9I78_02330)	surE	453932..454708 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
C9I78_RS02335 (C9I78_02335)	-	454708..455334 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C9I78_RS02340 (C9I78_02340)	-	455349..456272 (+)	924	WP_025546666.1	peptidoglycan DD-metalloendopeptidase family protein	-
C9I78_RS02345 (C9I78_02345)	rpoS	456353..457342 (+)	990	WP_162597300.1	RNA polymerase sigma factor RpoS	Regulator
C9I78_RS02350 (C9I78_02350)	mutS	457421..459982 (-)	2562	WP_025546664.1	DNA mismatch repair protein MutS	-
C9I78_RS02355 (C9I78_02355)	pncC	460067..460549 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
C9I78_RS02360 (C9I78_02360)	recA	460750..461367 (+)	618	Protein_379	recombinase RecA	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37614.52 Da
• Isoelectric Point: 4.6096

>NTDB_id=281628 C9I78_RS02345 WP_162597300.1 456353..457342(+) (rpoS) [Vibrio parahaemolyticus strain R14]
MSISNTVSKVEEFEYDNVLETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=281628 C9I78_RS02345 WP_162597300.1 456353..457342(+) (rpoS) [Vibrio parahaemolyticus strain R14]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGTGTTAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCGCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (170-243)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.431	100	0.857