Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   C5P47_RS06190 Genome accession   NZ_CP028140
Coordinates   1206579..1207616 (-) Length   345 a.a.
NCBI ID   WP_032464469.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS979     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1201579..1212616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5P47_RS06165 (C5P47_06150) - 1201583..1202110 (-) 528 WP_002983837.1 Dps family protein -
  C5P47_RS06170 (C5P47_06155) - 1202338..1202964 (+) 627 WP_002983834.1 A24 family peptidase -
  C5P47_RS06175 (C5P47_06160) rlmN 1203046..1204125 (-) 1080 WP_002992788.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  C5P47_RS06180 (C5P47_06165) - 1204129..1204749 (-) 621 WP_032464468.1 YutD family protein -
  C5P47_RS06185 (C5P47_06170) - 1205197..1206174 (-) 978 WP_002994809.1 LacI family DNA-binding transcriptional regulator -
  C5P47_RS06190 (C5P47_06175) sepM 1206579..1207616 (-) 1038 WP_032464469.1 SepM family pheromone-processing serine protease Regulator
  C5P47_RS06195 (C5P47_06180) coaD 1207603..1208094 (-) 492 WP_002983821.1 pantetheine-phosphate adenylyltransferase -
  C5P47_RS06200 (C5P47_06185) rsmD 1208084..1208623 (-) 540 WP_002983819.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C5P47_RS06205 (C5P47_06190) asnA 1208746..1209738 (-) 993 WP_032464470.1 aspartate--ammonia ligase -
  C5P47_RS06210 (C5P47_06195) arcC 1210051..1211001 (-) 951 WP_010922501.1 carbamate kinase -
  C5P47_RS06215 (C5P47_06200) - 1211021..1212352 (-) 1332 WP_032464471.1 dipeptidase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37527.17 Da        Isoelectric Point: 9.5788

>NTDB_id=281600 C5P47_RS06190 WP_032464469.1 1206579..1207616(-) (sepM) [Streptococcus pyogenes strain NGAS979]
MKRLKKIKWWLVGLLALISLLLALFFPLPYYIEMPGGAYDIRTVLQVNGKEDKRKGAYQFVAVGISRASLAQLLYAWLTP
FTEISTAEDTTGGYSDADFLRINQFYMETSQNAAIYQALSLAGKPVTLDYKGVYVLDVNNESTFKGTLHLADTVTGVNGN
QFTSSAELIDYVSHLKLGDEVTVQFTSDNKPKKGVGRIIKLKNGKNGIGIALTDHTSVNSEDTVIFSTKGVGGPSAGLMF
TLDIYDQITKEDLRKGRTIAGTGTIGKDGEVGDIGGAGLKVVAAAEAGADIFFVPNNPVDKEIKKVNPNAISNYEEAKRA
AKRLKTKMKIVPVTTVQEALVYLRK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=281600 C5P47_RS06190 WP_032464469.1 1206579..1207616(-) (sepM) [Streptococcus pyogenes strain NGAS979]
ATGAAAAGACTTAAAAAAATCAAATGGTGGTTAGTGGGTCTGCTAGCTTTAATCTCTTTGTTGCTAGCGTTATTTTTTCC
GCTACCTTATTATATTGAAATGCCTGGAGGCGCTTACGATATTCGGACTGTCTTACAAGTCAATGGCAAAGAAGACAAAC
GAAAAGGAGCTTACCAGTTTGTTGCAGTGGGCATTAGTCGTGCCAGCCTCGCGCAGCTATTATATGCTTGGCTGACACCG
TTTACTGAAATTAGTACAGCAGAAGATACAACAGGCGGATACAGCGATGCTGATTTCCTTCGAATTAATCAATTTTACAT
GGAAACATCACAAAATGCAGCTATTTATCAAGCTTTATCCTTAGCTGGAAAACCAGTTACATTAGATTATAAAGGCGTAT
ATGTTTTAGACGTAAACAACGAATCTACTTTTAAAGGAACGCTACACTTAGCAGATACTGTAACAGGTGTAAATGGTAAC
CAGTTTACTAGTTCAGCAGAACTTATTGACTATGTTTCTCACCTAAAACTAGGGGATGAAGTTACGGTTCAGTTTACGAG
TGATAATAAGCCTAAAAAAGGAGTTGGCCGTATTATCAAACTGAAAAATGGGAAAAATGGGATTGGCATTGCCTTGACTG
ATCATACAAGTGTCAATTCAGAAGACACAGTGATCTTTAGTACTAAAGGAGTAGGAGGACCTAGTGCTGGTCTAATGTTT
ACTCTTGATATATATGATCAAATAACTAAAGAAGATTTACGCAAGGGCCGTACAATTGCAGGTACAGGAACTATTGGCAA
GGATGGCGAAGTAGGAGATATTGGTGGTGCAGGTCTTAAAGTAGTTGCAGCAGCTGAAGCTGGTGCAGATATATTTTTTG
TTCCGAATAATCCTGTTGATAAGGAAATTAAAAAAGTTAATCCAAATGCTATAAGTAATTACGAAGAAGCCAAACGGGCA
GCCAAACGACTAAAGACCAAAATGAAGATTGTTCCTGTTACGACTGTTCAAGAGGCACTGGTTTATCTTCGCAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

68.986

100

0.69


Multiple sequence alignment