Detailed information NTG0281504

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D9Q99_RS05080
• Genome accession: NZ_CP033020
• Coordinates: 1055509..1056501 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli ATCC 8739
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1050509..1061501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9Q99_RS05050 (D9Q99_05080)	ispD	1050570..1051280 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D9Q99_RS05055 (D9Q99_05085)	ispF	1051280..1051759 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D9Q99_RS05060 (D9Q99_05090)	truD	1051756..1052805 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
D9Q99_RS05065 (D9Q99_05095)	surE	1052786..1053547 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
D9Q99_RS05070 (D9Q99_05100)	pcm	1053541..1054167 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
D9Q99_RS05075 (D9Q99_05105)	nlpD	1054352..1055446 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
D9Q99_RS05080 (D9Q99_05110)	rpoS	1055509..1056501 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
D9Q99_RS05085 (D9Q99_05115)	ygbN	1056595..1057959 (-)	1365	WP_000104462.1	GntP family transporter	-
D9Q99_RS05090 (D9Q99_05120)	ygbM	1058048..1058824 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
D9Q99_RS05095 (D9Q99_05125)	ygbL	1058829..1059467 (-)	639	WP_001278994.1	aldolase	-
D9Q99_RS05100 (D9Q99_05130)	otnK	1059464..1060726 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=281504 D9Q99_RS05080 WP_000081550.1 1055509..1056501(+) (rpoS) [Escherichia coli ATCC 8739]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=281504 D9Q99_RS05080 WP_000081550.1 1055509..1056501(+) (rpoS) [Escherichia coli ATCC 8739]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715