Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7S20_RS04255 Genome accession   NZ_CP028136
Coordinates   914311..915675 (+) Length   454 a.a.
NCBI ID   WP_107011316.1    Uniprot ID   A0A2R3Z2R7
Organism   Christiangramia fulva strain SH35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 909311..920675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S20_RS04230 (C7S20_04230) - 910013..910825 (-) 813 WP_107011311.1 glycogen/starch synthase -
  C7S20_RS04235 (C7S20_04235) panC 910936..911784 (+) 849 WP_107011312.1 pantoate--beta-alanine ligase -
  C7S20_RS04240 (C7S20_04240) panD 911795..912145 (+) 351 WP_107011313.1 aspartate 1-decarboxylase -
  C7S20_RS04245 (C7S20_04245) - 912149..913114 (+) 966 WP_107011314.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  C7S20_RS04250 (C7S20_04250) - 913150..914298 (+) 1149 WP_107011315.1 alpha/beta hydrolase-fold protein -
  C7S20_RS04255 (C7S20_04255) radA 914311..915675 (+) 1365 WP_107011316.1 DNA repair protein RadA Machinery gene
  C7S20_RS04260 (C7S20_04260) - 915715..916851 (+) 1137 WP_107011317.1 peptidoglycan DD-metalloendopeptidase family protein -
  C7S20_RS04265 (C7S20_04265) - 916848..917882 (-) 1035 WP_107011318.1 NADP(H)-dependent aldo-keto reductase -
  C7S20_RS04270 (C7S20_04270) - 917882..918847 (-) 966 WP_107011319.1 OmpA family protein -
  C7S20_RS04275 (C7S20_04275) - 918856..919617 (-) 762 WP_107011320.1 exodeoxyribonuclease III -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49967.61 Da        Isoelectric Point: 7.1207

>NTDB_id=281497 C7S20_RS04255 WP_107011316.1 914311..915675(+) (radA) [Christiangramia fulva strain SH35]
MAKVKTAYYCQKCGAQYAKWQGKCNSCGDWNTIVEEVIQKPDPKDWKTSAKKEAKKASKPLLISEIETSPQHRMITGNGE
LDRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLGLRNKVLYVSGEESQQQIKMRAQRINPDPANCFILTETKTQNIFRN
VEEIEPEVVIIDSIQTLHSDYIESSPGSISQIRECTAELIKFAKESNTPVILIGHITKEGSIAGPKVLEHMVDTVLQFEG
DRNHVYRILRAHKNRFGSTHELGIYEMQGSGLREVSNPSEILISRNEEDLSGTAIASTLEGMRPLMIEIQALVSTAVYGT
PQRSTTGYNAKRLNMLLAVLEKRAGFRLGAKDVFLNITGGISVEDPAIDLAVVAAILSSNEDIALEKDFCFSAEVGLAGE
IRPVMKIEQRILEAEKLGFGSIMISKLSKIPRQHFKINIVKVSKIEDVVGYLFS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=281497 C7S20_RS04255 WP_107011316.1 914311..915675(+) (radA) [Christiangramia fulva strain SH35]
ATGGCGAAGGTGAAAACCGCGTATTATTGTCAAAAATGTGGGGCGCAATATGCCAAATGGCAGGGAAAATGCAATTCCTG
CGGCGACTGGAATACTATTGTTGAAGAGGTTATACAAAAGCCTGATCCCAAAGACTGGAAAACTTCAGCTAAAAAAGAAG
CCAAAAAAGCTTCAAAACCTTTGCTGATTTCTGAAATTGAGACCAGTCCGCAGCACCGAATGATCACCGGGAATGGAGAA
CTTGACCGCGTTCTTGGCGGAGGCCTCGTTCCCGGCTCCCTTACCCTGCTCGGCGGCGAACCCGGAATTGGGAAAAGTAC
GCTGTTGCTTCAAATTTCTCTGGGCCTTCGCAATAAAGTGCTGTACGTTTCAGGAGAAGAAAGCCAGCAGCAAATCAAAA
TGCGGGCACAACGAATCAATCCCGATCCCGCAAATTGTTTCATTTTAACCGAAACCAAAACTCAGAATATCTTTCGCAAT
GTGGAAGAAATAGAACCTGAGGTGGTGATCATAGACTCCATACAAACCCTTCACAGCGATTATATTGAAAGTTCCCCGGG
AAGCATCTCCCAAATTAGAGAATGTACCGCAGAACTTATCAAATTTGCCAAAGAGAGCAACACACCGGTTATCTTGATAG
GCCACATCACCAAGGAAGGCAGCATTGCCGGTCCAAAAGTACTGGAACACATGGTTGATACCGTGCTTCAGTTTGAAGGC
GACCGCAATCATGTTTACCGGATTCTAAGGGCGCACAAAAACCGATTTGGCTCAACCCATGAACTCGGAATTTATGAAAT
GCAGGGCAGCGGATTAAGAGAAGTTTCCAATCCTTCCGAAATTTTAATTTCCAGGAATGAAGAAGATCTTAGTGGCACCG
CAATCGCTTCCACGCTGGAAGGTATGCGCCCGCTTATGATCGAAATCCAGGCTTTGGTAAGCACCGCCGTTTATGGCACA
CCTCAGCGATCTACCACGGGTTATAATGCGAAAAGACTGAATATGCTTTTAGCCGTTCTTGAAAAACGCGCAGGTTTCAG
GTTGGGAGCCAAAGATGTTTTCTTAAATATTACCGGTGGGATTAGCGTGGAAGATCCCGCGATCGACCTGGCGGTAGTGG
CCGCCATTCTTTCTTCAAATGAAGATATCGCGCTGGAAAAAGATTTCTGCTTTTCTGCTGAAGTAGGCCTTGCCGGGGAA
ATTCGCCCGGTTATGAAAATTGAACAACGTATTCTCGAAGCCGAAAAATTAGGTTTTGGATCTATAATGATTTCAAAACT
TAGTAAAATTCCGAGACAGCACTTCAAGATCAACATCGTTAAAGTTTCCAAAATTGAGGATGTGGTAGGATATCTTTTTT
CCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(339-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3Z2R7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

48.043

100

0.487
  radA Streptococcus mitis SK321

48.035

100

0.485
  radA Streptococcus pneumoniae D39

47.826

100

0.485
  radA Streptococcus pneumoniae TIGR4

47.826

100

0.485
  radA Streptococcus pneumoniae R6

47.826

100

0.485
  radA Streptococcus pneumoniae Rx1

47.826

100

0.485
  radA Bacillus subtilis subsp. subtilis str. 168

51.288

94.053

0.482

Multiple sequence alignment