Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9V54_RS08570 Genome accession   NZ_CP032992
Coordinates   1764851..1765327 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain W5-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759851..1770327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V54_RS08520 sbmC 1760343..1760816 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  D9V54_RS08525 yeeA 1761014..1762072 (+) 1059 WP_001200905.1 FUSC family protein -
  D9V54_RS08530 tmaR 1762244..1762573 (+) 330 WP_000450409.1 DUF496 family protein -
  D9V54_RS08535 - 1762674..1762856 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D9V54_RS08540 - 1762910..1763056 (+) 147 Protein_1641 transposase domain-containing protein -
  D9V54_RS08545 - 1763345..1763425 (-) 81 Protein_1642 hypothetical protein -
  D9V54_RS08550 yeeW 1763471..1763665 (-) 195 WP_000988600.1 DUF5983 family protein -
  D9V54_RS08555 cbtA 1763662..1764036 (-) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  D9V54_RS08560 cbeA 1764125..1764493 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D9V54_RS08565 yeeT 1764567..1764788 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  D9V54_RS08570 radC 1764851..1765327 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  D9V54_RS08575 - 1765343..1765822 (-) 480 WP_000860076.1 antirestriction protein -
  D9V54_RS08580 - 1765904..1766725 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  D9V54_RS08590 - 1766946..1767356 (-) 411 WP_000846713.1 hypothetical protein -
  D9V54_RS08595 - 1767372..1767779 (-) 408 Protein_1651 hypothetical protein -
  D9V54_RS25465 - 1769144..1769332 (+) 189 Protein_1653 IS4 family transposase -
  D9V54_RS25470 - 1769311..1769484 (+) 174 Protein_1654 cobalamin biosynthesis protein -
  D9V54_RS08615 cobU 1769636..1770181 (+) 546 WP_000973176.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=281439 D9V54_RS08570 WP_001186773.1 1764851..1765327(-) (radC) [Escherichia coli strain W5-6]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=281439 D9V54_RS08570 WP_001186773.1 1764851..1765327(-) (radC) [Escherichia coli strain W5-6]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment