Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9V54_RS00355 Genome accession   NZ_CP032992
Coordinates   71949..72617 (+) Length   222 a.a.
NCBI ID   WP_001336353.1    Uniprot ID   -
Organism   Escherichia coli strain W5-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66949..77617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V54_RS00325 yicC 66969..67832 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  D9V54_RS00330 rph 67959..68675 (+) 717 WP_001247093.1 ribonuclease PH -
  D9V54_RS00335 pyrE 68740..69381 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  D9V54_RS00340 slmA 69418..70014 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  D9V54_RS00345 dut 70121..70579 (-) 459 WP_000976070.1 dUTP diphosphatase -
  D9V54_RS00350 coaBC 70557..71777 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D9V54_RS00355 radC 71949..72617 (+) 669 WP_001336353.1 DNA repair protein RadC Machinery gene
  D9V54_RS00360 rpmB 72834..73070 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  D9V54_RS00365 rpmG 73091..73258 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  D9V54_RS00370 mutM 73356..74165 (+) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  D9V54_RS00375 coaD 74204..74683 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  D9V54_RS00380 waaA 74691..75968 (-) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  D9V54_RS00385 rfaQ 76375..77445 (+) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25290.41 Da        Isoelectric Point: 7.8777

>NTDB_id=281409 D9V54_RS00355 WP_001336353.1 71949..72617(+) (radC) [Escherichia coli strain W5-6]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=281409 D9V54_RS00355 WP_001336353.1 71949..72617(+) (radC) [Escherichia coli strain W5-6]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496