Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D9V55_RS18015 Genome accession   NZ_CP032989
Coordinates   3609595..3610200 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain W2-5     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3604595..3615200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V55_RS17990 aes 3604736..3605695 (+) 960 WP_000801838.1 acetyl esterase -
  D9V55_RS17995 hemH 3605692..3606654 (-) 963 WP_001250120.1 ferrochelatase -
  D9V55_RS18000 adk 3606786..3607430 (-) 645 WP_001345715.1 adenylate kinase -
  D9V55_RS18010 htpG 3607611..3609485 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  D9V55_RS18015 recR 3609595..3610200 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  D9V55_RS18020 ybaB 3610200..3610529 (-) 330 WP_001442196.1 YbaB/EbfC family nucleoid-associated protein -
  D9V55_RS18025 dnaX 3610582..3612513 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  D9V55_RS18030 apt 3612642..3613193 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  D9V55_RS18035 ybaN 3613346..3613723 (-) 378 WP_001188905.1 DUF454 family protein -
  D9V55_RS18040 priC 3613793..3614320 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  D9V55_RS18045 rsmS 3614334..3614495 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  D9V55_RS26240 - 3614548..3614646 (-) 99 Protein_3431 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=281379 D9V55_RS18015 WP_001195025.1 3609595..3610200(-) (recR) [Escherichia coli strain W2-5]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=281379 D9V55_RS18015 WP_001195025.1 3609595..3610200(-) (recR) [Escherichia coli strain W2-5]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443