Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9V55_RS09805 Genome accession   NZ_CP032989
Coordinates   1960548..1961024 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain W2-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1955548..1966024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V55_RS09755 sbmC 1956041..1956514 (+) 474 WP_121636706.1 DNA gyrase inhibitor SbmC -
  D9V55_RS09760 yeeA 1956712..1957770 (+) 1059 WP_121636707.1 FUSC family protein -
  D9V55_RS09765 tmaR 1957942..1958271 (+) 330 WP_000450409.1 DUF496 family protein -
  D9V55_RS26315 - 1958372..1958554 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D9V55_RS25935 - 1958674..1958754 (+) 81 WP_023441679.1 hypothetical protein -
  D9V55_RS09780 - 1959043..1959123 (-) 81 Protein_1845 hypothetical protein -
  D9V55_RS09785 yeeW 1959169..1959363 (-) 195 WP_000988599.1 DUF5983 family protein -
  D9V55_RS09790 - 1959425..1959733 (-) 309 Protein_1847 TA system toxin CbtA family protein -
  D9V55_RS09795 cbeA 1959822..1960190 (-) 369 WP_001551305.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D9V55_RS09800 yeeT 1960264..1960485 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  D9V55_RS09805 radC 1960548..1961024 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  D9V55_RS09810 - 1961040..1961519 (-) 480 WP_000860076.1 antirestriction protein -
  D9V55_RS09815 - 1961601..1962422 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  D9V55_RS09825 - 1962643..1963053 (-) 411 WP_000846713.1 hypothetical protein -
  D9V55_RS09830 - 1963069..1963751 (-) 683 Protein_1854 hypothetical protein -
  D9V55_RS09835 - 1963887..1964957 (-) 1071 WP_121636708.1 patatin-like phospholipase family protein -
  D9V55_RS09840 - 1964954..1965859 (-) 906 WP_000203534.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=281360 D9V55_RS09805 WP_001186773.1 1960548..1961024(-) (radC) [Escherichia coli strain W2-5]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=281360 D9V55_RS09805 WP_001186773.1 1960548..1961024(-) (radC) [Escherichia coli strain W2-5]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392