Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D9V55_RS06405 Genome accession   NZ_CP032989
Coordinates   1246417..1246932 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain W2-5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1241417..1251932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V55_RS06360 csrA 1242137..1242322 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  D9V55_RS06390 yqaB 1243647..1244213 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  D9V55_RS06395 yqaA 1244210..1244638 (+) 429 WP_001287457.1 YqaA family protein -
  D9V55_RS06400 gshA 1244711..1246267 (+) 1557 WP_000611770.1 glutamate--cysteine ligase -
  D9V55_RS06405 luxS 1246417..1246932 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  D9V55_RS06410 emrB 1246996..1248534 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  D9V55_RS06415 emrA 1248551..1249723 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  D9V55_RS06420 emrR 1249850..1250380 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  D9V55_RS06425 ygaH 1250471..1250806 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  D9V55_RS06430 ygaZ 1250796..1251533 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=281350 D9V55_RS06405 WP_001130210.1 1246417..1246932(+) (luxS) [Escherichia coli strain W2-5]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=281350 D9V55_RS06405 WP_001130210.1 1246417..1246932(+) (luxS) [Escherichia coli strain W2-5]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment