Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9V55_RS03490 Genome accession   NZ_CP032989
Coordinates   693183..693659 (+) Length   158 a.a.
NCBI ID   WP_001186771.1    Uniprot ID   -
Organism   Escherichia coli strain W2-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 688183..698659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V55_RS03465 - 688365..691211 (+) 2847 WP_121636693.1 Ag43/Cah family autotransporter adhesin -
  D9V55_RS03475 - 691538..692356 (+) 819 WP_072658182.1 DUF932 domain-containing protein -
  D9V55_RS03485 - 692694..693167 (+) 474 WP_001355870.1 antirestriction protein -
  D9V55_RS03490 radC 693183..693659 (+) 477 WP_001186771.1 RadC family protein Machinery gene
  D9V55_RS03495 - 693722..693943 (+) 222 WP_000692327.1 DUF987 domain-containing protein -
  D9V55_RS03500 - 693962..694606 (+) 645 WP_047928873.1 hypothetical protein -
  D9V55_RS03505 - 694656..695024 (+) 369 WP_047928872.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D9V55_RS03510 - 695114..695491 (+) 378 WP_047928871.1 TA system toxin CbtA family protein -
  D9V55_RS03515 - 695488..695637 (+) 150 Protein_666 DUF5983 family protein -
  D9V55_RS03520 - 695713..695910 (+) 198 WP_096093965.1 DUF957 domain-containing protein -
  D9V55_RS03525 - 695995..696840 (+) 846 WP_072650597.1 DUF4942 domain-containing protein -
  D9V55_RS03535 mug 697140..697646 (+) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17675.29 Da        Isoelectric Point: 7.2020

>NTDB_id=281337 D9V55_RS03490 WP_001186771.1 693183..693659(+) (radC) [Escherichia coli strain W2-5]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=281337 D9V55_RS03490 WP_001186771.1 693183..693659(+) (radC) [Escherichia coli strain W2-5]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTACCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTTGGTGGTAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399