Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9V55_RS00360 Genome accession   NZ_CP032989
Coordinates   72552..73220 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain W2-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 67552..78220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V55_RS00330 yicC 67572..68435 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  D9V55_RS00335 rph 68562..69278 (+) 717 WP_001247089.1 ribonuclease PH -
  D9V55_RS00340 pyrE 69343..69984 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  D9V55_RS00345 slmA 70021..70617 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  D9V55_RS00350 dut 70724..71182 (-) 459 WP_000976070.1 dUTP diphosphatase -
  D9V55_RS00355 coaBC 71160..72380 (-) 1221 WP_000050109.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D9V55_RS00360 radC 72552..73220 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  D9V55_RS00365 rpmB 73437..73673 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  D9V55_RS00370 rpmG 73694..73861 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  D9V55_RS00375 mutM 73959..74768 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  D9V55_RS00380 coaD 74807..75286 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  D9V55_RS00385 waaA 75294..76571 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  D9V55_RS00390 rfaQ 76984..78042 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=281327 D9V55_RS00360 WP_001297375.1 72552..73220(+) (radC) [Escherichia coli strain W2-5]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=281327 D9V55_RS00360 WP_001297375.1 72552..73220(+) (radC) [Escherichia coli strain W2-5]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGTTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGACTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496