Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D9V56_RS18180 Genome accession   NZ_CP032986
Coordinates   3677937..3678416 (+) Length   159 a.a.
NCBI ID   WP_021553292.1    Uniprot ID   -
Organism   Escherichia coli strain BE2-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3672937..3683416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V56_RS18150 - 3673786..3674991 (-) 1206 Protein_3469 IS66 family transposase -
  D9V56_RS18155 tnpB 3674988..3675215 (-) 228 Protein_3470 IS66 family insertion sequence element accessory protein TnpB -
  D9V56_RS18165 - 3675875..3676750 (+) 876 WP_053266523.1 GTPase family protein -
  D9V56_RS24420 - 3677011..3677541 (+) 531 Protein_3472 transcriptional regulator -
  D9V56_RS24425 - 3677515..3677925 (+) 411 WP_250146760.1 antirestriction protein -
  D9V56_RS18180 radC 3677937..3678416 (+) 480 WP_021553292.1 DNA repair protein RadC Machinery gene
  D9V56_RS18185 - 3678437..3678658 (+) 222 WP_044068431.1 DUF987 domain-containing protein -
  D9V56_RS18190 - 3678682..3679041 (+) 360 WP_072644718.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D9V56_RS18195 - 3679092..3679469 (+) 378 WP_001194695.1 TA system toxin CbtA family protein -
  D9V56_RS18200 - 3679466..3679957 (+) 492 WP_000777682.1 DUF5983 family protein -
  D9V56_RS18205 - 3679997..3680191 (+) 195 WP_032155094.1 DUF957 domain-containing protein -
  D9V56_RS18210 - 3680272..3681116 (+) 845 Protein_3480 DUF4942 domain-containing protein -
  D9V56_RS18220 dnaQ 3681459..3682190 (-) 732 WP_001297205.1 DNA polymerase III subunit epsilon -
  D9V56_RS18225 rnhA 3682255..3682722 (+) 468 WP_000917883.1 ribonuclease HI -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17818.32 Da        Isoelectric Point: 6.5823

>NTDB_id=281302 D9V56_RS18180 WP_021553292.1 3677937..3678416(+) (radC) [Escherichia coli strain BE2-5]
MEQQLPLFARELAPADLQTVRKALSLLECQLRETGASFTSSHAVRDWLRLQLASLEREEFTALFLDNQHRLIAHETLFTG
TINHTQVHPREVVKAGLKHNCAAVIVAHSHPSGEAEPSKADRQVTTRIQQALDLVDIRLLDHLVVGGMEITSFADRGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=281302 D9V56_RS18180 WP_021553292.1 3677937..3678416(+) (radC) [Escherichia coli strain BE2-5]
ATGGAGCAACAGTTACCGTTGTTTGCCCGTGAATTAGCCCCTGCCGACCTGCAGACAGTCAGGAAAGCCTTATCTCTGTT
GGAGTGCCAGCTACGTGAAACCGGGGCGTCATTTACTTCCAGCCATGCCGTCCGCGACTGGCTACGCCTGCAGCTCGCGT
CACTGGAGCGGGAAGAGTTTACCGCGCTCTTTCTCGATAACCAGCATCGCCTGATAGCCCACGAAACGCTATTTACCGGC
ACCATCAACCATACGCAGGTCCATCCCCGCGAAGTGGTGAAGGCCGGTCTGAAGCATAACTGCGCCGCTGTCATTGTCGC
CCATAGCCATCCCTCCGGGGAGGCTGAACCCAGCAAGGCAGACCGTCAGGTCACTACGCGTATTCAGCAGGCGCTGGACC
TGGTTGATATCCGCCTGCTGGACCACCTGGTGGTCGGTGGCATGGAGATCACCTCGTTTGCAGATCGTGGCTGGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.724

72.956

0.377