Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D9V56_RS16795 Genome accession   NZ_CP032986
Coordinates   3396202..3396807 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain BE2-5     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3391202..3401807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V56_RS16770 aes 3391239..3392198 (+) 960 WP_000801813.1 acetyl esterase -
  D9V56_RS16775 hemH 3392195..3393157 (-) 963 WP_001250103.1 ferrochelatase -
  D9V56_RS16780 adk 3393393..3394037 (-) 645 WP_001220233.1 adenylate kinase -
  D9V56_RS16790 htpG 3394218..3396092 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  D9V56_RS16795 recR 3396202..3396807 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  D9V56_RS16800 ybaB 3396807..3397136 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  D9V56_RS16805 dnaX 3397189..3399120 (-) 1932 WP_000122010.1 DNA polymerase III subunit gamma/tau -
  D9V56_RS16810 apt 3399249..3399800 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  D9V56_RS16815 ybaN 3399953..3400330 (-) 378 WP_001188905.1 DUF454 family protein -
  D9V56_RS16820 priC 3400400..3400927 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  D9V56_RS16825 rsmS 3400941..3401102 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  D9V56_RS24540 - 3401155..3401253 (-) 99 Protein_3205 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=281297 D9V56_RS16795 WP_001195025.1 3396202..3396807(-) (recR) [Escherichia coli strain BE2-5]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=281297 D9V56_RS16795 WP_001195025.1 3396202..3396807(-) (recR) [Escherichia coli strain BE2-5]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443