Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I3M_RS06520 Genome accession   NZ_CP028116
Coordinates   1160378..1161007 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O26 str. RM8426     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1155378..1166007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3M_RS06495 (I3M_06475) ycbZ 1155780..1157540 (-) 1761 WP_000156528.1 Lon protease family protein -
  I3M_RS06500 (I3M_06480) matP 1157726..1158178 (+) 453 WP_000877167.1 macrodomain Ter protein MatP -
  I3M_RS06505 (I3M_06485) ompA 1158253..1159293 (-) 1041 WP_000750416.1 porin OmpA -
  I3M_RS06515 (I3M_06495) sulA 1159650..1160159 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I3M_RS06520 (I3M_06500) sxy/tfoX 1160378..1161007 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I3M_RS06525 (I3M_06505) yccS 1160970..1163132 (-) 2163 WP_000875023.1 YccS family putative transporter -
  I3M_RS06530 (I3M_06510) yccF 1163142..1163588 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I3M_RS06535 (I3M_06515) helD 1163711..1165765 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=281289 I3M_RS06520 WP_000839153.1 1160378..1161007(+) (sxy/tfoX) [Escherichia coli O26 str. RM8426]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=281289 I3M_RS06520 WP_000839153.1 1160378..1161007(+) (sxy/tfoX) [Escherichia coli O26 str. RM8426]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment