Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D9V56_RS08850 Genome accession   NZ_CP032986
Coordinates   1818346..1819770 (-) Length   474 a.a.
NCBI ID   WP_121689829.1    Uniprot ID   -
Organism   Escherichia coli strain BE2-5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1813346..1824770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V56_RS08820 yeeZ 1813401..1814225 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  D9V56_RS08825 yeeY 1814271..1815200 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  D9V56_RS08830 yoeI 1815415..1815477 (+) 63 WP_010723108.1 membrane protein YoeI -
  D9V56_RS08835 plaP 1815467..1816825 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  D9V56_RS08840 tsuA 1817004..1818062 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  D9V56_RS08845 tsuB 1818076..1818303 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  D9V56_RS08850 sbcB 1818346..1819770 (-) 1425 WP_121689829.1 exodeoxyribonuclease I Machinery gene
  D9V56_RS08855 - 1819952..1821130 (+) 1179 WP_001007952.1 site-specific integrase -
  D9V56_RS08860 - 1821111..1821302 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  D9V56_RS08865 yfdT 1821391..1821696 (-) 306 WP_000627693.1 protein YfdT -
  D9V56_RS08870 - 1821696..1822058 (-) 363 WP_001242744.1 hypothetical protein -
  D9V56_RS08875 yfdR 1822049..1822585 (-) 537 WP_000008235.1 5'-deoxynucleotidase -
  D9V56_RS24285 - 1822667..1822986 (-) 320 Protein_1688 hypothetical protein -
  D9V56_RS08885 - 1823099..1823386 (+) 288 WP_000141754.1 hypothetical protein -
  D9V56_RS24290 - 1823299..1823607 (+) 309 Protein_1690 phage tail protein -
  D9V56_RS08895 - 1823607..1824200 (+) 594 WP_000805577.1 tail fiber assembly protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54322.65 Da        Isoelectric Point: 5.8941

>NTDB_id=281278 D9V56_RS08850 WP_121689829.1 1818346..1819770(-) (sbcB) [Escherichia coli strain BE2-5]
MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKKKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=281278 D9V56_RS08850 WP_121689829.1 1818346..1819770(-) (sbcB) [Escherichia coli strain BE2-5]
ATGACAGGCACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAAAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586

Multiple sequence alignment