Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D9V56_RS05580 Genome accession   NZ_CP032986
Coordinates   1130262..1130777 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain BE2-5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1125262..1135777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9V56_RS05535 csrA 1125849..1126034 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  D9V56_RS05565 yqaB 1127492..1128058 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  D9V56_RS05570 yqaA 1128055..1128483 (+) 429 WP_001287454.1 YqaA family protein -
  D9V56_RS05575 gshA 1128556..1130112 (+) 1557 WP_077491682.1 glutamate--cysteine ligase -
  D9V56_RS05580 luxS 1130262..1130777 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  D9V56_RS05585 emrB 1130841..1132379 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  D9V56_RS05590 emrA 1132396..1133568 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  D9V56_RS05595 emrR 1133695..1134225 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  D9V56_RS05600 ygaH 1134316..1134651 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  D9V56_RS05605 ygaZ 1134641..1135378 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=281268 D9V56_RS05580 WP_001130211.1 1130262..1130777(+) (luxS) [Escherichia coli strain BE2-5]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=281268 D9V56_RS05580 WP_001130211.1 1130262..1130777(+) (luxS) [Escherichia coli strain BE2-5]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731