Detailed information NTG0281265

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D9V56_RS05305
• Genome accession: NZ_CP032986
• Coordinates: 1077443..1078435 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BE2-5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1072443..1083435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9V56_RS05275	ispD	1072504..1073214 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D9V56_RS05280	ispF	1073214..1073693 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D9V56_RS05285	truD	1073690..1074739 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
D9V56_RS05290	surE	1074720..1075481 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
D9V56_RS05295	pcm	1075475..1076101 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
D9V56_RS05300	nlpD	1076286..1077380 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
D9V56_RS05305	rpoS	1077443..1078435 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
D9V56_RS05310	ygbN	1078529..1079893 (-)	1365	WP_077492754.1	GntP family transporter	-
D9V56_RS05315	ygbM	1079982..1080758 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
D9V56_RS05320	ygbL	1080763..1081401 (-)	639	WP_001278994.1	aldolase	-
D9V56_RS05325	otnK	1081398..1082660 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=281265 D9V56_RS05305 WP_000081550.1 1077443..1078435(+) (rpoS) [Escherichia coli strain BE2-5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=281265 D9V56_RS05305 WP_000081550.1 1077443..1078435(+) (rpoS) [Escherichia coli strain BE2-5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715