Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   At1D1460_RS13315 Genome accession   NZ_CP032926
Coordinates   2613460..2615268 (+) Length   602 a.a.
NCBI ID   WP_111797872.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 1D1460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2608460..2620268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1460_RS13315 (At1D1460_25420) recQ 2613460..2615268 (+) 1809 WP_111797872.1 DNA helicase RecQ Machinery gene
  At1D1460_RS13320 (At1D1460_25430) - 2615327..2616559 (-) 1233 WP_060722703.1 ROK family transcriptional regulator -
  At1D1460_RS13325 (At1D1460_25440) - 2616822..2617844 (+) 1023 WP_003507133.1 sugar ABC transporter substrate-binding protein -
  At1D1460_RS13330 (At1D1460_25450) - 2618073..2619155 (+) 1083 WP_003507134.1 ABC transporter permease -
  At1D1460_RS13335 (At1D1460_25460) - 2619155..2619937 (+) 783 WP_003507135.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67109.84 Da        Isoelectric Point: 6.4514

>NTDB_id=281241 At1D1460_RS13315 WP_111797872.1 2613460..2615268(+) (recQ) [Agrobacterium tumefaciens strain 1D1460]
MADDPLHILKTVYGYDVFRGRQAEIIRHVVAGNNAFVLMPTGGGKSLCYQIPALARDGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWRDMRAGKVDILYAAPETLLKPDVLDALQPIALSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPDTPRMALTATADGPTRTEILGHLGIEEDDAFIAGFDRPNIRYAIMEKDNPRAQLKRFLKDRDSESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREENQTRFQHGEAVIIVATVAFGMGIDKPDVRFVVHIDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETASCRRQVLLSYFGDRCQPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRMIEVDLSG
HGGLSISEDGRRFLREKPALMLRIPSAPRSARQQTPRNTVSTILPEADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELATAKPVSAKEMAGIPGVGDTKLERYGPAFLAAIMQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=281241 At1D1460_RS13315 WP_111797872.1 2613460..2615268(+) (recQ) [Agrobacterium tumefaciens strain 1D1460]
GTGGCCGATGATCCCTTGCATATACTCAAGACCGTCTATGGCTACGATGTGTTTCGCGGGCGGCAGGCCGAAATCATCCG
GCATGTGGTGGCGGGCAATAATGCTTTCGTTCTGATGCCGACAGGTGGTGGCAAGTCGCTTTGTTACCAGATTCCAGCGC
TTGCGCGCGACGGCATGGGGCTGATCGTCTCGCCGCTCATCGCGCTGATGGTAGATCAGGTCGCTGCCCTGCGTCAGGCA
GGCGTGCGGGCCGAGGCTCTTAATTCCGATCTTTCTCCGGAAGAGCGGCGTGCGCTTTGGCGGGATATGCGGGCAGGCAA
AGTGGATATTCTTTATGCCGCACCGGAAACCCTTCTCAAACCGGATGTCCTGGACGCTCTCCAGCCCATTGCCCTGTCGT
TGATCGCTATCGACGAAGCCCATTGTCTGTCTCAATGGGGGCATGATTTCCGGCCACCCTACCGCCAGCTTGATACGCTG
ATCGAGCGTTTTCCCGACACGCCACGCATGGCGCTGACAGCAACGGCCGATGGGCCTACGCGCACCGAAATTCTCGGTCA
CCTGGGAATCGAAGAGGATGACGCCTTCATCGCCGGCTTCGATAGGCCCAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCACGCGCGCAGCTGAAGCGCTTTTTGAAGGACCGCGACAGTGAAAGCGGGATCGTCTATTGCCTTTCCAAACGGAAG
GTGGACGAAACGGCCGCATGGCTGCGGGAGGAGGGGCGCGATGCACTGCCCTATCACGCTGGGATGGACAAGGCCGCCCG
CGAGGAGAACCAGACCCGTTTCCAGCACGGCGAGGCGGTCATCATTGTCGCGACCGTCGCTTTTGGCATGGGCATAGACA
AGCCCGATGTGCGCTTCGTCGTTCATATTGATCTGCCCGGCAGCATCGAAGCCTATTATCAGGAAACGGGCCGAGCCGGC
CGCGATGGTCTGCCATCGGACGTACTCATGCTCTACGGTTACGAAGACATCGCCCTGCGCAACCGCTTTATCGAAGAGTC
GGATGCTGCGGACCAGCGCAAATATATGGAGCGCCAGAAGCTTGACGCGCTGCTCGGCCTTGCGGAAACCGCGAGCTGCC
GCAGGCAGGTTCTGCTGTCCTATTTCGGCGACCGGTGTCAGCCCTGCGGTAATTGCGATACCTGCGCCGAGCCGCCGGAC
CTGTTTGACGGGGCCATCGCCGCACAGAAGCTTCTGTCCTGTATTTATCGCACCGGTGAACGTTTTGGCCAAGCCTATGT
CATCCGTGTGTTGCTGGGGGTCGAGGATGAGCGGATTTCCCGCTTCGGACATGATCGCATCACGACATACGGTATAGGCA
AGGAACATGACAATCGCACCTGGCGCGCCATTCTGCGTCAACTGGTTGCGTTACGCATGATTGAAGTGGATCTGTCCGGG
CATGGTGGACTGTCCATTTCCGAGGACGGACGGCGTTTCCTGCGCGAAAAACCTGCGTTGATGCTGAGGATACCATCTGC
TCCGCGTTCCGCCCGGCAACAGACGCCCCGCAACACGGTATCGACGATTTTGCCTGAAGCTGATCGCAGTCTTTTTGAGG
CACTGCGTGCGAAGCGCATGGAAATTGCCCGTGCGCAGAACGTTCCGCCCTATGTGATTTTCCACGACAAGACCCTGATA
GAACTTGCCACGGCAAAACCGGTCTCCGCGAAGGAAATGGCTGGGATCCCCGGCGTCGGAGACACCAAGCTGGAGCGCTA
CGGGCCAGCCTTTCTGGCGGCGATCATGCAGCACGCCGCTGGCGAGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(22-177)

Helicase conserved C-terminal domain (Helicase_C)

(219-322)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

HRDC domain (HRDC)

(530-595)

RQC domain (RQC)

(398-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.584

99.003

0.372