Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GURA_RS00655 Genome accession   NC_009483
Coordinates   182970..184319 (-) Length   449 a.a.
NCBI ID   WP_041245639.1    Uniprot ID   -
Organism   Geotalea uraniireducens Rf4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 177970..189319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GURA_RS00635 (Gura_0126) - 178140..179504 (-) 1365 WP_011937071.1 DUF4403 family protein -
  GURA_RS24020 (Gura_0127) - 179620..179790 (-) 171 WP_011937072.1 hypothetical protein -
  GURA_RS24850 (Gura_0128) - 180118..182460 (-) 2343 WP_011937073.1 GAF domain-containing protein -
  GURA_RS00650 (Gura_0129) dksA 182520..182876 (-) 357 WP_011937074.1 RNA polymerase-binding protein DksA -
  GURA_RS00655 (Gura_0130) radA 182970..184319 (-) 1350 WP_041245639.1 DNA repair protein RadA Machinery gene
  GURA_RS00660 (Gura_0131) - 184480..186123 (+) 1644 WP_011937076.1 HEAT repeat domain-containing protein -
  GURA_RS00665 (Gura_0132) - 186120..187493 (+) 1374 WP_011937077.1 HD-GYP domain-containing protein -
  GURA_RS00670 (Gura_0133) - 187500..188093 (-) 594 WP_011937078.1 HEAT repeat domain-containing protein -
  GURA_RS00675 (Gura_0134) - 188155..188478 (+) 324 WP_011937079.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47625.06 Da        Isoelectric Point: 7.4266

>NTDB_id=28124 GURA_RS00655 WP_041245639.1 182970..184319(-) (radA) [Geotalea uraniireducens Rf4]
MKTKTVYACQKCGYQSAKWLGRCPDCNSWNTLEEELQLKTGLQSGVSSPDLPPLPISQVGGEAEMRLPTGISEFDRVLGG
GLVAGSLVLIGGDPGIGKSTLLLQATDHFAKASGSVLYVSGEESARQIKLRGARMGVNASDLFILAETSLEKILTHAQRM
QPKALVVDSIQTVFTSALESAPGSVSQVRETAGRLMMLAKGSGIPVFLVGHVTKDGSIAGPRVLEHLVDTVLYFEGDSGH
PFRILRAVKNRFGSTNEIGVFEMKEGGLFEVKNPSELFLSERPLGVSGSVVVATLEGSRPLLVELQALVTASSLGVPRRT
TIGVDHNRLSLLVAVLEKKVGLTLSGQDIFLNVAGGVKLNEPAADLGMVTAVASSHLDKTVDQHTLLLGEVGLAGEVRGI
TQPELRVKEAAKLGFSRCILPAGNLKQVKAKGMELIGVRSVEETLEKAF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=28124 GURA_RS00655 WP_041245639.1 182970..184319(-) (radA) [Geotalea uraniireducens Rf4]
TTGAAGACAAAAACAGTGTACGCGTGCCAGAAATGCGGTTATCAGTCCGCCAAGTGGCTGGGCCGATGCCCTGATTGCAA
CTCATGGAATACGCTGGAGGAAGAACTCCAACTCAAAACCGGTTTGCAATCAGGGGTATCAAGCCCGGATTTGCCACCAC
TACCCATATCCCAGGTCGGCGGCGAGGCGGAGATGCGTCTCCCCACGGGCATTTCCGAATTTGACCGCGTGCTGGGTGGC
GGTTTGGTTGCAGGGTCACTGGTGTTGATCGGCGGTGACCCCGGTATCGGCAAATCGACCCTTCTTTTGCAGGCAACAGA
CCACTTCGCAAAGGCATCGGGGAGCGTTCTCTATGTCTCCGGCGAGGAATCCGCCCGCCAGATAAAGCTCCGCGGCGCCA
GGATGGGGGTAAATGCCTCGGACCTCTTTATCCTGGCAGAAACCTCACTGGAAAAAATCCTTACCCATGCACAACGCATG
CAGCCCAAGGCCTTGGTCGTCGATTCGATTCAAACCGTCTTTACCTCGGCACTGGAGTCGGCGCCGGGAAGTGTCAGCCA
GGTCCGTGAAACTGCCGGCAGACTGATGATGCTGGCTAAAGGCAGCGGCATTCCGGTTTTCCTCGTCGGCCATGTCACCA
AAGACGGCTCCATTGCCGGTCCGCGCGTTCTTGAACATCTGGTCGACACCGTGCTCTATTTCGAAGGAGACAGCGGCCAC
CCTTTCAGAATACTGAGAGCGGTCAAGAACCGCTTTGGTTCAACCAATGAGATCGGCGTTTTTGAAATGAAGGAGGGGGG
ATTATTCGAAGTCAAAAATCCTTCCGAACTCTTCCTCTCCGAGCGCCCCCTGGGGGTTTCGGGTTCGGTAGTAGTTGCAA
CCCTGGAGGGTAGCCGTCCCCTTCTCGTTGAGCTGCAAGCGCTCGTAACCGCTTCATCTCTTGGTGTTCCCCGGCGTACG
ACCATCGGCGTGGATCACAATCGTCTTTCTCTGCTCGTTGCCGTGCTTGAGAAAAAAGTCGGGTTAACTTTATCGGGACA
GGATATATTCCTGAATGTAGCGGGCGGAGTCAAACTGAACGAACCAGCAGCCGACCTCGGCATGGTAACCGCCGTAGCTT
CAAGCCATCTTGATAAAACCGTCGACCAGCACACCCTCCTGCTCGGCGAGGTCGGGCTTGCCGGGGAGGTACGGGGGATT
ACCCAACCGGAACTCAGGGTAAAGGAAGCCGCAAAACTCGGTTTCAGCCGTTGCATTCTTCCCGCCGGCAATCTCAAACA
GGTCAAAGCAAAAGGAATGGAGCTCATCGGGGTCAGATCCGTGGAAGAGACGCTGGAAAAGGCCTTTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(338-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

AAA domain (AAA_25)

(75-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.363

100

0.581
  radA Streptococcus mitis NCTC 12261

52.772

100

0.53
  radA Streptococcus pneumoniae Rx1

52.55

100

0.528
  radA Streptococcus pneumoniae D39

52.55

100

0.528
  radA Streptococcus pneumoniae R6

52.55

100

0.528
  radA Streptococcus pneumoniae TIGR4

52.55

100

0.528
  radA Streptococcus mitis SK321

52.328

100

0.526

Multiple sequence alignment