Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   At1D1108_RS12495 Genome accession   NZ_CP032921
Coordinates   2550021..2551829 (+) Length   602 a.a.
NCBI ID   WP_121556878.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 1D1108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2545021..2556829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1108_RS12495 (At1D1108_24160) recQ 2550021..2551829 (+) 1809 WP_121556878.1 DNA helicase RecQ Machinery gene
  At1D1108_RS12500 (At1D1108_24170) - 2551884..2553116 (-) 1233 WP_038489293.1 ROK family transcriptional regulator -
  At1D1108_RS12505 (At1D1108_24180) - 2553383..2554405 (+) 1023 WP_003514241.1 sugar ABC transporter substrate-binding protein -
  At1D1108_RS12510 (At1D1108_24190) - 2554628..2555710 (+) 1083 WP_013635210.1 ABC transporter permease -
  At1D1108_RS12515 (At1D1108_24200) - 2555710..2556492 (+) 783 WP_013635211.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67027.70 Da        Isoelectric Point: 6.2132

>NTDB_id=281204 At1D1108_RS12495 WP_121556878.1 2550021..2551829(+) (recQ) [Agrobacterium tumefaciens strain 1D1108]
MITDPLQILKTVYGYDTFRGQQAEIIRHVMEGNNAFVLMPTGGGKSLCYQIPALARQGMGLVVSPLIALMVDQVAALRQA
GVRTEALNSDLSPEERRALWQDMRAGKVDILYAAPETLLKPDVLDALQPISLSLIAIDEAHCLSQWGHDFRPPYRQLDTL
IERFPETPRMALTATADEPTRAEILGHLGINGSDAFIAGFDRPNIRYAIMEKDNPRTQLKRFLTGREDESGIVYCLSKRK
VDETAAWLREEGRDALPYHAGMDKAAREANQTHFQHGEAVIMVATVAFGMGIDKPDVRFVVHIDLPSSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAGDQRKNMERRKLDALLGLAETAGCRRRVLLSYFGDYCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGMEDERISSFGHDRITTYGIGKEHDNRTWRAILRQMVALRLIEVDLAG
HGGLSISEEGRRFLREKPSLMLRIPSAPRSARQQATRKPAATVLPEADRSLFEALRAKRMEIARAQNVPPYVIFHDKTLI
ELAASRPASVGEMAQIPGVGDTKLERYGPAFLAAIMEHAASE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=281204 At1D1108_RS12495 WP_121556878.1 2550021..2551829(+) (recQ) [Agrobacterium tumefaciens strain 1D1108]
GTGATCACCGACCCCTTGCAGATTCTCAAGACCGTCTATGGCTACGATACGTTTCGTGGACAGCAGGCCGAAATCATCCG
GCATGTGATGGAAGGCAACAATGCATTTGTATTGATGCCAACAGGGGGCGGGAAGTCGCTTTGTTACCAGATTCCGGCGC
TCGCCCGTCAGGGAATGGGGCTGGTTGTTTCGCCCCTGATCGCGCTGATGGTTGATCAGGTCGCCGCCTTGCGTCAGGCA
GGTGTGCGGACAGAAGCTCTCAACTCCGATCTTTCCCCAGAAGAGCGGCGGGCACTCTGGCAGGATATGCGGGCTGGCAA
GGTCGATATTCTCTATGCCGCGCCGGAGACCCTTCTCAAGCCGGATGTTCTGGATGCGCTTCAACCTATCAGCCTGTCGC
TGATCGCTATCGACGAAGCTCATTGTCTATCGCAGTGGGGGCACGATTTCCGCCCCCCGTACCGCCAGCTAGACACGTTG
ATCGAGCGCTTTCCGGAGACGCCACGCATGGCGCTCACGGCGACTGCGGACGAGCCAACCCGCGCCGAAATTCTGGGTCA
TCTCGGGATAAACGGAAGCGACGCCTTCATAGCCGGATTCGATCGGCCAAATATCCGCTATGCGATCATGGAAAAGGATA
ATCCACGTACGCAGCTGAAGCGCTTCCTGACGGGTCGCGAGGACGAAAGCGGCATCGTCTATTGCCTTTCCAAACGGAAG
GTCGATGAGACGGCAGCCTGGCTGCGCGAGGAGGGGCGCGATGCGCTGCCCTATCACGCCGGCATGGACAAGGCCGCCCG
CGAGGCGAACCAGACCCACTTCCAGCATGGTGAAGCTGTAATCATGGTTGCAACCGTGGCTTTCGGTATGGGCATCGATA
AACCGGATGTGCGCTTCGTCGTGCATATCGATCTGCCCAGCAGCATCGAAGCCTATTATCAGGAAACCGGCCGTGCCGGC
CGTGATGGTCTGCCGTCCGACGTGCTTATGCTTTACGGTTATGAAGACATCGCATTGCGCAACCGCTTTATCGAAGAGTC
GGATGCGGGCGACCAGCGCAAAAACATGGAGCGCCGGAAGCTCGATGCGTTGCTTGGCCTCGCGGAAACCGCCGGTTGCC
GTCGGCGGGTGCTTTTGTCTTATTTCGGCGACTATTGCGAGCCCTGCGGCAATTGCGACACCTGTGCGGAACCGCCGGAC
CTGTTTGATGGTGCCATTGCCGCGCAGAAGTTGCTGTCCTGCATTTACCGCACGGGAGAACGTTTCGGCCAGGCCTATGT
CATCCGCGTATTGCTGGGCATGGAAGATGAACGGATATCGAGCTTTGGTCACGATCGGATCACGACCTACGGCATCGGCA
AAGAGCACGACAATCGCACCTGGCGGGCCATCCTGCGCCAGATGGTTGCGCTGCGCCTGATCGAGGTTGATCTGGCCGGT
CACGGGGGATTGTCCATTTCCGAAGAAGGGAGGCGGTTCCTGCGCGAAAAGCCGTCCCTGATGTTGAGGATACCGTCCGC
TCCCCGTTCGGCGCGACAACAGGCGACTCGCAAGCCCGCCGCCACTGTTTTACCGGAGGCCGATCGCAGCCTCTTTGAGG
CGCTGCGTGCGAAGCGCATGGAAATTGCCCGCGCACAGAACGTTCCGCCCTATGTGATTTTTCACGACAAGACACTCATT
GAGCTTGCGGCATCAAGACCGGCCTCTGTGGGGGAAATGGCGCAGATACCTGGAGTGGGAGACACAAAGCTGGAACGATA
CGGCCCTGCTTTTCTGGCGGCGATCATGGAACATGCCGCCAGCGAGTGA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(530-595)

Helicase conserved C-terminal domain (Helicase_C)

(220-322)

RQC domain (RQC)

(398-509)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

DEAD/DEAH box helicase (DEAD)

(22-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.313

100

0.374

Multiple sequence alignment