Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   C7I86_RS12195 Genome accession   NZ_CP028094
Coordinates   2590692..2592710 (+) Length   672 a.a.
NCBI ID   WP_010873519.1    Uniprot ID   -
Organism   Synechocystis sp. IPPAS B-1465     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2585692..2597710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7I86_RS12180 (C7I86_12160) - 2586330..2587364 (-) 1035 WP_010873516.1 AI-2E family transporter -
  C7I86_RS12185 (C7I86_12165) dnaK 2587413..2589491 (-) 2079 WP_010873517.1 molecular chaperone DnaK -
  C7I86_RS12190 (C7I86_12170) grpE 2589725..2590474 (-) 750 WP_010873518.1 nucleotide exchange factor GrpE -
  C7I86_RS12195 (C7I86_12175) pilB/pilB1 2590692..2592710 (+) 2019 WP_010873519.1 GspE/PulE family protein Machinery gene
  C7I86_RS12200 (C7I86_12180) - 2592794..2593948 (+) 1155 WP_010873520.1 RNA methyltransferase -
  C7I86_RS12205 (C7I86_12185) - 2594170..2594808 (+) 639 WP_010873521.1 class I SAM-dependent methyltransferase -
  C7I86_RS12210 (C7I86_12190) ribD 2594896..2596002 (+) 1107 WP_010873522.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  C7I86_RS12215 (C7I86_12195) - 2595953..2596105 (-) 153 WP_071822661.1 DUF2256 domain-containing protein -
  C7I86_RS12220 (C7I86_12200) - 2596121..2597407 (-) 1287 WP_010873523.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75111.64 Da        Isoelectric Point: 5.2598

>NTDB_id=281186 C7I86_RS12195 WP_010873519.1 2590692..2592710(+) (pilB/pilB1) [Synechocystis sp. IPPAS B-1465]
MTSSSSSKKSRAVALRNYFSPFGNKLVAGGHVDAEQLRQALVQVKKTGRSLPEELKAVTGRELSPELLRQYKKNQLFELK
VLYGVDSVDPEVAPIATQQMAELIGRFFPLDTCRRFKFLPLAQQEGDPPSVLVAMVDPDNLAAQDELNRILRVKGFELRR
LVVTQDDFNQLLEQYYAIREEWEAAQEKRDQERALDKLNDLTDIVGSIDMNLGEDKEDVDNALDSNDANQAPVINLVNKI
LAKALQEGTSDIHVEPQEETLRIRFRKDGVLNQAFDPLPRKITPAVVARFKIMADMDIAERRSPQDGKIRRIYQGRKVDF
RVNTLPSRYGEKVCLRILDNSATQLGLDFLITNPETLQTVRELAARPYGLMLVTGPTGSGKSTTLYSVLAERNSPEVNIN
TAEDPIEYALPGITQVQVIREKGMDFSNILRAFMRQDPDVILVGETRDKETAKTAIEAALTGHLVLTTLHTNDAAGAIAR
LDEMGVEPFMVSGSLLGVLAQRLMRKVCTECRIAYHPSKEELSRFGLSASGDEVVTFYKANSLSPDEIHLARQKGNLCQK
CSGSGYKGRVGVYEVMRNSERIAELINQGATTDRIKDCAVEEGMITLLAYSLNLVQEGYTTLEEVERVTFTDTGLESEMR
AKRKSALTCRTCAAELQQEWLDCPYCMTSRFS

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=281186 C7I86_RS12195 WP_010873519.1 2590692..2592710(+) (pilB/pilB1) [Synechocystis sp. IPPAS B-1465]
ATGACATCTTCCTCCTCTTCCAAGAAAAGCCGTGCCGTTGCCCTACGAAATTATTTTTCCCCCTTCGGCAATAAATTGGT
GGCGGGGGGCCATGTAGATGCTGAACAATTGCGACAGGCCCTAGTCCAGGTGAAAAAAACTGGGCGGTCTTTGCCCGAGG
AACTTAAGGCAGTCACTGGCCGAGAATTGTCCCCAGAACTACTGCGGCAGTACAAAAAAAATCAGTTATTTGAGCTCAAA
GTACTTTACGGGGTGGACAGCGTCGATCCGGAGGTTGCCCCGATCGCCACCCAGCAAATGGCCGAGTTGATTGGGCGATT
TTTTCCTTTGGATACTTGTCGGCGATTCAAGTTTTTGCCCTTAGCCCAGCAGGAAGGCGACCCCCCCAGTGTGCTAGTGG
CCATGGTGGACCCCGATAACTTGGCTGCCCAGGACGAGCTAAACCGAATTTTGCGGGTTAAAGGTTTTGAATTGCGCCGC
TTGGTGGTCACCCAAGATGATTTTAACCAACTGTTGGAACAGTACTATGCCATCCGGGAAGAGTGGGAGGCGGCCCAGGA
AAAAAGGGACCAGGAAAGGGCCCTTGATAAACTTAATGATTTGACGGATATTGTCGGCTCCATCGACATGAATCTGGGGG
AGGACAAAGAAGATGTAGATAATGCTCTAGACTCCAACGATGCTAACCAAGCACCGGTGATTAACCTGGTCAACAAAATT
TTGGCTAAGGCTCTCCAGGAAGGAACTTCCGACATTCACGTGGAGCCGCAGGAAGAAACCCTGAGAATTCGTTTCCGCAA
GGATGGGGTTTTAAATCAGGCTTTCGATCCCCTGCCCCGCAAAATTACCCCCGCCGTGGTGGCCCGTTTTAAAATTATGG
CGGACATGGACATTGCGGAGAGGCGATCGCCCCAGGATGGCAAAATTCGCCGTATTTACCAGGGCAGGAAGGTGGATTTT
CGGGTTAATACCCTACCCAGCCGCTATGGGGAAAAGGTTTGTTTGCGGATTTTGGACAACTCCGCCACTCAGTTGGGCTT
AGATTTTCTAATCACTAACCCCGAAACCCTACAAACGGTAAGGGAATTGGCCGCCCGGCCCTATGGCTTAATGTTGGTGA
CGGGGCCCACCGGATCGGGAAAATCCACCACCCTCTACTCGGTGTTGGCGGAACGCAATAGCCCCGAGGTGAATATCAAC
ACAGCGGAGGACCCGATTGAGTATGCTCTACCGGGCATTACCCAAGTGCAGGTGATTCGGGAAAAGGGCATGGATTTTTC
CAATATTCTGCGGGCATTTATGCGTCAGGATCCCGATGTGATTCTGGTGGGGGAAACCAGGGATAAGGAGACGGCCAAAA
CGGCCATTGAGGCGGCTCTGACTGGACACTTAGTTCTCACTACTCTCCACACCAATGATGCGGCCGGGGCGATCGCCAGA
TTGGATGAAATGGGAGTGGAGCCGTTTATGGTTTCTGGGTCATTGTTGGGGGTGTTGGCCCAACGGCTGATGCGGAAAGT
TTGTACGGAATGTCGCATTGCTTACCACCCTAGCAAGGAAGAATTGTCCCGCTTTGGGCTGTCCGCTTCCGGGGATGAAG
TGGTTACTTTTTATAAAGCCAATTCCCTCAGTCCCGACGAAATCCATCTTGCCCGTCAAAAAGGTAATTTATGTCAAAAA
TGTAGTGGCAGTGGCTATAAGGGTCGGGTGGGGGTCTATGAGGTGATGCGTAATTCTGAGCGTATTGCTGAATTGATTAA
CCAGGGGGCCACCACTGACCGCATTAAGGATTGTGCGGTGGAAGAGGGCATGATCACCCTATTGGCCTATAGTCTTAATT
TAGTGCAGGAAGGCTACACCACCCTAGAGGAGGTGGAACGGGTCACTTTCACCGATACCGGACTGGAGTCAGAAATGCGG
GCTAAGCGCAAGAGTGCTTTAACCTGTCGTACGTGTGCGGCGGAACTGCAACAGGAATGGCTTGATTGTCCCTATTGCAT
GACTTCCCGGTTTAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(239-506)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(73-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment