Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   At1D1108_RS05005 Genome accession   NZ_CP032921
Coordinates   1008590..1009312 (-) Length   240 a.a.
NCBI ID   WP_065657947.1    Uniprot ID   A0AA44JAS7
Organism   Agrobacterium tumefaciens strain 1D1108     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003590..1014312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1108_RS04995 (At1D1108_09790) - 1005014..1007449 (+) 2436 WP_121556555.1 ComEC/Rec2 family competence protein -
  At1D1108_RS05000 (At1D1108_09800) - 1007466..1008149 (-) 684 WP_019565539.1 glutathione S-transferase family protein -
  At1D1108_RS05005 (At1D1108_09810) dinR/lexA 1008590..1009312 (-) 723 WP_065657947.1 transcriptional repressor LexA Regulator
  At1D1108_RS05010 (At1D1108_09820) - 1009524..1010405 (+) 882 WP_112289924.1 VOC family protein -
  At1D1108_RS05015 (At1D1108_09830) kdsA 1010405..1011250 (+) 846 WP_113473216.1 3-deoxy-8-phosphooctulonate synthase -
  At1D1108_RS05020 (At1D1108_09840) eno 1011398..1012672 (+) 1275 WP_003512870.1 phosphopyruvate hydratase -
  At1D1108_RS05025 (At1D1108_09850) - 1013009..1013326 (+) 318 WP_121556556.1 FtsB family cell division protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 26012.95 Da        Isoelectric Point: 9.3311

>NTDB_id=281185 At1D1108_RS05005 WP_065657947.1 1008590..1009312(-) (dinR/lexA) [Agrobacterium tumefaciens strain 1D1108]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYTPGARPQ
RGFSPSIIEGSLGKPKTPEPAPAPKTPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGTGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=281185 At1D1108_RS05005 WP_065657947.1 1008590..1009312(-) (dinR/lexA) [Agrobacterium tumefaciens strain 1D1108]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAACGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCTTCGAAATCCGGCATCCACCGCCTGATAACCGCTCTCGAAGAGCGCGGGTTCA
TTCGTCGGCTACCGAATAGAGCTCGGGCGCTGGAAGTCATCAAGCTGCCCGAGGCTTATACGCCGGGTGCAAGGCCGCAG
CGCGGCTTTTCGCCGAGCATTATCGAAGGCAGCCTTGGCAAGCCCAAGACGCCGGAACCGGCCCCTGCCCCCAAGACGCC
GGCCAACGATCTGGGCGGGGCTGTCACCGTGCCGGTCATGGGCCGCATCGCTGCGGGCGTGCCGATTTCCGCCATCCAGA
ACAACACCCATGATGTGGCCGTGCCAGTAGACATGCTTGGCACGGGCGAACATTACGCTCTTGAGGTCAAGGGTGATTCG
ATGATCGAGGCCGGCATTTTCGACGGCGACACAGTCATCATCCGCAACGGCAACACCGCCAATCCCGGGGACATCGTTGT
GGCTCTGGTGGATGACGAGGAAGCCACGCTGAAGCGCTTCCGCCGCAAGGGTGCCTCCATTGCGCTCGAGGCGGCAAACC
CAGCCTATGAGACCCGTATTTTCGGGCCCGACCGGGTGAAAATTCAGGGCAAGCTGGTGGGGCTGATCCGCCGCTACCAT
TGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA44JAS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363