Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   At1D1108_RS01675 Genome accession   NZ_CP032921
Coordinates   346631..348451 (-) Length   606 a.a.
NCBI ID   WP_111803517.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 1D1108     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 341631..353451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1108_RS01650 (At1D1108_03150) - 342410..342649 (+) 240 WP_019564234.1 DUF4170 domain-containing protein -
  At1D1108_RS01655 (At1D1108_03160) waaA 342865..344187 (+) 1323 WP_121556414.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  At1D1108_RS01660 (At1D1108_03170) - 344181..344918 (+) 738 WP_013635566.1 HAD family hydrolase -
  At1D1108_RS01665 (At1D1108_03180) lpxK 345083..346129 (+) 1047 WP_121556415.1 tetraacyldisaccharide 4'-kinase -
  At1D1108_RS01670 (At1D1108_03190) - 346260..346481 (-) 222 WP_003519053.1 DUF2093 domain-containing protein -
  At1D1108_RS01675 (At1D1108_03200) hexB 346631..348451 (-) 1821 WP_111803517.1 DNA mismatch repair endonuclease MutL Machinery gene
  At1D1108_RS01680 (At1D1108_03210) - 348859..350478 (+) 1620 WP_162714258.1 response regulator -
  At1D1108_RS01685 (At1D1108_03220) - 350621..351973 (+) 1353 WP_121556416.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  At1D1108_RS01690 (At1D1108_03230) - 352068..352955 (-) 888 WP_113472836.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 65119.82 Da        Isoelectric Point: 6.4000

>NTDB_id=281176 At1D1108_RS01675 WP_111803517.1 346631..348451(-) (hexB) [Agrobacterium tumefaciens strain 1D1108]
MAIKQLSETLINQIAAGEVIERPSSATKELVENAIDAGATRIEIATAGGGKGLVRITDNGSGMSPADLELAVRRHCTSKI
STTLDDIRTLGFRGEALPSIGSVAKLSITSRQHGAEQGSVISVTGGKVSEVRPAAANAGTIVEVRDLFFATPARLKFLKT
ERAEAAAITEVVKRMAIAFPHIRFVLSGTDRSTLEIPSTGDDHLARMAQILGAEFKDNAIEIDAGREDVTLSGFAGVPTF
NRGNSAHQYVFVNGRPVQDKLLLSAIRGAYAETVPHGRYPVAVLSLTLDPAFVDVNVHPAKSDVRFRDPGLVRGLIVGAI
RQALTRDGDRAATTGASQMMNAFRPGYSPSNLRPSAAATWSAAASPSRPLAISGNMQFAEAVQSRFSDITMPTARAEPRE
VYEASASSSLEPSQYPLGAARAQLHQNYIVAQTEDGLVIVDQHAAHERLVFEEMRNALHSRRPPSQVLLIPEIIDLPEED
CDRLMDHAAGFDALGLVIERFGPGAVAVRETPAMLGEVNVQGLVRQLADEIAEWDAASTLANKLEYVAATMACHGSVRSG
RRMRPEEMNALLRQMENTPGSGQCNHGRPTYIELKLSDIERLFGRS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=281176 At1D1108_RS01675 WP_111803517.1 346631..348451(-) (hexB) [Agrobacterium tumefaciens strain 1D1108]
ATGGCCATCAAGCAGCTTTCAGAAACCCTCATCAACCAGATCGCCGCCGGCGAGGTCATCGAAAGACCCTCCAGCGCCAC
GAAGGAGCTGGTGGAAAACGCCATCGACGCGGGCGCAACGCGCATCGAAATCGCCACGGCGGGCGGTGGCAAGGGACTGG
TCCGCATCACCGATAACGGCTCCGGCATGTCGCCTGCCGATCTGGAGCTTGCGGTCCGACGCCATTGCACCTCGAAAATA
TCCACCACGCTTGACGATATCCGCACGCTTGGCTTTCGCGGCGAGGCCCTGCCCTCCATCGGCTCGGTTGCCAAGCTTTC
CATCACCAGCCGGCAACACGGCGCAGAACAGGGTTCGGTGATCTCCGTCACCGGCGGCAAAGTCTCCGAGGTCCGGCCCG
CCGCTGCCAATGCCGGCACCATCGTCGAGGTGCGCGACCTGTTTTTCGCGACGCCCGCACGGCTGAAATTCCTGAAGACG
GAGCGAGCGGAGGCAGCCGCCATTACCGAAGTCGTCAAGCGGATGGCAATTGCCTTTCCGCATATCCGCTTCGTGCTGTC
AGGCACCGACCGCTCCACGCTTGAAATCCCTTCCACCGGCGACGATCACCTTGCCCGCATGGCGCAGATTCTCGGTGCCG
AGTTCAAGGACAACGCCATCGAAATCGATGCCGGGCGCGAGGATGTAACGCTCTCCGGTTTTGCCGGCGTGCCGACCTTC
AACCGCGGCAACTCGGCGCATCAATATGTTTTCGTCAACGGTCGCCCGGTGCAGGACAAATTGCTGTTGTCCGCCATTCG
CGGTGCCTATGCCGAAACCGTGCCGCACGGGCGATATCCGGTCGCAGTGCTGTCCCTGACGCTCGATCCCGCCTTTGTCG
ACGTGAACGTGCATCCGGCGAAATCAGATGTGCGCTTCCGCGATCCCGGTCTCGTTCGCGGGCTGATCGTCGGTGCGATC
CGCCAGGCGCTGACCCGCGACGGTGACAGGGCGGCGACGACTGGTGCCAGCCAGATGATGAACGCCTTTCGCCCCGGCTA
CAGCCCGTCCAATCTCCGACCGTCTGCCGCTGCGACATGGTCCGCCGCGGCCTCGCCTTCCCGACCGCTTGCCATTTCCG
GGAACATGCAATTTGCCGAGGCCGTGCAATCGCGCTTTTCCGACATCACCATGCCGACCGCGCGGGCAGAACCCCGCGAG
GTTTACGAGGCCTCTGCAAGCTCGTCGCTCGAACCGTCACAATATCCGCTCGGCGCCGCGCGGGCGCAGTTGCACCAGAA
TTACATCGTCGCGCAGACGGAAGACGGCCTCGTCATCGTCGACCAGCATGCGGCGCATGAACGGCTGGTGTTTGAGGAAA
TGCGCAATGCGCTGCATTCCAGACGCCCGCCTTCACAGGTGCTGCTCATTCCTGAGATCATCGACCTTCCCGAAGAGGAT
TGCGACCGGCTGATGGACCATGCGGCTGGTTTCGATGCACTGGGACTGGTCATCGAGCGTTTCGGGCCGGGGGCGGTCGC
GGTTCGCGAAACGCCGGCGATGCTTGGCGAGGTCAACGTGCAGGGGCTGGTGCGGCAGCTTGCCGACGAGATCGCTGAAT
GGGACGCTGCCTCCACGCTTGCCAACAAGCTGGAATATGTCGCCGCCACCATGGCTTGCCACGGCTCGGTGCGTTCAGGG
CGGCGCATGCGGCCGGAGGAGATGAACGCGCTTTTACGGCAGATGGAAAACACGCCGGGTTCAGGACAGTGCAATCACGG
TCGTCCGACCTATATTGAGCTAAAACTTTCCGATATAGAACGTCTCTTCGGCCGAAGCTGA

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(416-562)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(24-122)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(208-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

34.326

100

0.361

Multiple sequence alignment